Directory src/dr/

Total Files:

1

Deleted Files:

1

Lines of Code:

-5

[root]/src/dr
             app (0 files, 0 lines)
                 SnAPhyl (0 files, 0 lines)
                     datapanel (0 files, 0 lines)
                     images (4 files, 0 lines)
                     initializationpanel (0 files, 0 lines)
                     mcmcpanel (0 files, 0 lines)
                     operatorspanel (0 files, 0 lines)
                     priorsPanel (0 files, 0 lines)
                     util (0 files, 0 lines)
                 beagle (0 files, 0 lines)
                     evomodel (0 files, 0 lines)
                         branchmodel (5 files, 31 lines)
                         branchratemodel (0 files, 0 lines)
                         operators (1 files, -6 lines)
                         parsers (38 files, 850 lines)
                         sitemodel (6 files, 0 lines)
                         substmodel (35 files, 609 lines)
                         treelikelihood (14 files, 1342 lines)
                         utilities (4 files, 47 lines)
                     tools (3 files, -640 lines)
                         parsers (3 files, 25 lines)
                 beast (12 files, 719 lines)
                 beastdev (0 files, 0 lines)
                 beauti (7 files, 645 lines)
                     alignmentviewer (17 files, 1061 lines)
                     ancestralStatesPanel (2 files, 8 lines)
                     clockModelsPanel (3 files, 2 lines)
                     components (1 files, 13 lines)
                         ancestralstates (3 files, 79 lines)
                         continuous (4 files, 54 lines)
                         discrete (4 files, 38 lines)
                         dnds (0 files, 0 lines)
                         dollo (3 files, 68 lines)
                         hpm (4 files, 38 lines)
                         sequenceerror (3 files, 36 lines)
                         tipdatesampling (3 files, 63 lines)
                     datapanel (7 files, 110 lines)
                     enumTypes (0 files, 0 lines)
                     generator (17 files, 92 lines)
                     mcmcpanel (1 files, 0 lines)
                     modelsPanel (0 files, 0 lines)
                     operatorspanel (1 files, 0 lines)
                     options (25 files, 133 lines)
                     priorsPanel (8 files, 52 lines)
                     siteModelsPanel (3 files, -2 lines)
                     taxonsetspanel (2 files, 25 lines)
                     tipdatepanel (4 files, 125 lines)
                     traitspanel (5 files, 55 lines)
                     treespanel (7 files, 1 lines)
                     types (19 files, 409 lines)
                     util (11 files, 168 lines)
                 bfe (8 files, 744 lines)
                 bss (34 files, 619 lines)
                     icons (8 files, 0 lines)
                     test (1 files, -5 lines)
                 coalgen (8 files, 6 lines)
                     images (5 files, 0 lines)
                 gui (4 files, 61 lines)
                     chart (27 files, 1462 lines)
                     components (4 files, 11 lines)
                     table (8 files, 796 lines)
                         images (2 files, 0 lines)
                     tree (7 files, 1236 lines)
                     util (5 files, 376 lines)
                 java16compat (0 files, 0 lines)
                 mapper (0 files, 0 lines)
                     application (8 files, 2348 lines)
                         images (2 files, 0 lines)
                         mapper (5 files, 139 lines)
                         menus (4 files, 273 lines)
                 misc (1 files, 405 lines)
                 oldbeauti (22 files, 1363 lines)
                     images (4 files, 0 lines)
                 pathogen (12 files, 461 lines)
                     images (5 files, 0 lines)
                 phylogeography (0 files, 0 lines)
                     builder (0 files, 0 lines)
                     generator (0 files, 0 lines)
                     gui (0 files, 0 lines)
                     spread (0 files, 0 lines)
                         images (0 files, 0 lines)
                         inputpanel (0 files, 0 lines)
                         layerspanel (0 files, 0 lines)
                         renderpanel (0 files, 0 lines)
                     structure (0 files, 0 lines)
                     tools (8 files, 993 lines)
                         kml (9 files, 527 lines)
                 plugin (2 files, 1 lines)
                 seqgen (5 files, 32 lines)
                 tools (27 files, 2802 lines)
                 tracer (0 files, 0 lines)
                     analysis (13 files, 12 lines)
                     application (10 files, 61 lines)
                         images (2 files, 0 lines)
                     images (2 files, 0 lines)
                     traces (18 files, 192 lines)
                         images (5 files, 0 lines)
                 treespace (12 files, 651 lines)
                     inputpanel (2 files, 389 lines)
                     renderpanel (1 files, 16 lines)
                 treestat (7 files, 2196 lines)
                     statistics (21 files, 1897 lines)
                 util (3 files, 712 lines)
                 vcs (3 files, 3 lines)
             evolution (3 files, 121 lines)
                 alignment (15 files, 3765 lines)
                 coalescent (27 files, 4279 lines)
                     structure (5 files, 770 lines)
                 colouring (11 files, 3239 lines)
                 continuous (1 files, 359 lines)
                 datatype (19 files, 2368 lines)
                 distance (4 files, 523 lines)
                 geo (0 files, 0 lines)
                 io (9 files, 2582 lines)
                 parsimony (1 files, 317 lines)
                 sequence (2 files, 503 lines)
                 tree (30 files, 4689 lines)
                 util (7 files, 1084 lines)
                 wrightfisher (5 files, 1010 lines)
             evomodel (0 files, 0 lines)
                 MSSD (6 files, 24 lines)
                 alternativesplicing (0 files, 0 lines)
                 antigenic (15 files, 1084 lines)
                 approxPopTree (5 files, 235 lines)
                 arg (21 files, 738 lines)
                     branchratemodel (1 files, -6 lines)
                     coalescent (3 files, -3 lines)
                     likelihood (2 files, 12 lines)
                     operators (10 files, -14 lines)
                 beagle (0 files, 0 lines)
                     parsers (0 files, 0 lines)
                     sitemodel (0 files, 0 lines)
                     substmodel (0 files, 0 lines)
                     treelikelihood (0 files, 0 lines)
                 branchratemodel (20 files, 1690 lines)
                 clock (4 files, -5 lines)
                 coalescent (45 files, 1840 lines)
                     operators (7 files, 501 lines)
                     structure (4 files, 1009 lines)
                 continuous (33 files, 1520 lines)
                     plink (1 files, 67 lines)
                 epidemiology (13 files, 1439 lines)
                     casetocase (12 files, 117 lines)
                 ibd (3 files, 44 lines)
                 indel (7 files, 2301 lines)
                 newsubstmodel (0 files, 0 lines)
                 newtreelikelihood (11 files, 20 lines)
                 operators (49 files, 2430 lines)
                 randomYule (0 files, 0 lines)
                 simulator (1 files, 193 lines)
                 sitemodel (13 files, 2228 lines)
                 speciation (39 files, 781 lines)
                     ModelAveragingResearch (4 files, 448 lines)
                 substmodel (54 files, 6390 lines)
                 transmission (6 files, 1491 lines)
                 tree (48 files, 5267 lines)
                     randomlocalmodel (4 files, 42 lines)
                 treelikelihood (26 files, 4834 lines)
             evomodelxml (7 files, 413 lines)
                 MSSD (6 files, 289 lines)
                 branchratemodel (14 files, 501 lines)
                 clock (2 files, 149 lines)
                 coalescent (35 files, 1879 lines)
                     operators (6 files, 371 lines)
                 indel (3 files, 164 lines)
                 operators (28 files, 1050 lines)
                 sitemodel (7 files, 388 lines)
                 speciation (35 files, 1088 lines)
                 substmodel (29 files, 1965 lines)
                 tree (27 files, 962 lines)
                 treelikelihood (7 files, 29 lines)
             evoxml (36 files, 2635 lines)
                 util (4 files, 400 lines)
             exporters (0 files, 0 lines)
             geo (36 files, 5718 lines)
                 cartogram (1 files, 23 lines)
                 contouring (8 files, 1612 lines)
                 distributions (4 files, 92 lines)
                 math (3 files, 467 lines)
                 operators (2 files, 219 lines)
             gui (0 files, 0 lines)
                 chart (0 files, 0 lines)
                 graph (0 files, 0 lines)
                 table (0 files, 0 lines)
                     images (0 files, 0 lines)
                 tree (0 files, 0 lines)
             inference (0 files, 0 lines)
                 distribution (31 files, 2427 lines)
                 loggers (12 files, 1106 lines)
                 markovchain (4 files, 521 lines)
                 markovjumps (7 files, 111 lines)
                 mcmc (4 files, 584 lines)
                 mcmcmc (2 files, 588 lines)
                 ml (1 files, 289 lines)
                 model (75 files, 4385 lines)
                 operators (59 files, 2303 lines)
                 parallel (4 files, 85 lines)
                 prior (11 files, 828 lines)
                 trace (26 files, 2366 lines)
                 tutorial (1 files, 0 lines)
                 xml (0 files, 0 lines)
             inferencexml (2 files, 70 lines)
                 distribution (26 files, 1353 lines)
                 loggers (3 files, 101 lines)
                 model (32 files, 1527 lines)
                 operators (31 files, 1316 lines)
                 trace (6 files, 436 lines)
             java16compat (0 files, 0 lines)
             math (21 files, 4075 lines)
                 distributions (33 files, 1354 lines)
                 functionEval (1 files, 363 lines)
                 interfaces (1 files, 39 lines)
                 matrixAlgebra (8 files, 3456 lines)
             matrix (3 files, 1169 lines)
             stats (3 files, 581 lines)
             util (26 files, 1919 lines)
             xml (25 files, 3248 lines)