StatSVN - Directory src/dr/evolution/sequence/

Lines of Code

src/dr/evolution/sequence/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	10 (100.0%)	406 (100.0%)	40.6
alexei.drummond	4 (40.0%)	363 (89.4%)	90.7
rambaut	2 (20.0%)	34 (8.4%)	17.0
msuchard	2 (20.0%)	6 (1.5%)	3.0
jheled	2 (20.0%)	3 (0.7%)	1.5

Most Recent Commits

msuchard 2011-12-13 16:26 Rev.: 4541

Force all sequences into upper-case.

6 lines of code changed in 2 files:

src/dr/evolution/sequence: Sequence.java (new)

alexei.drummond 2011-03-09 10:25 Rev.: 3861

seqgen generalization prep

1 lines of code changed in 2 files:

src/dr/evolution/sequence: Sequences.java (new)

jheled 2009-09-08 11:29 Rev.: 2224

generify via auto intelliJ

3 lines of code changed in 2 files:

src/dr/evolution/sequence: Sequence.java (+1 -1), Sequences.java (+2 -2)

alexei.drummond 2009-07-13 22:26 Rev.: 1844

Refactoring to remove illegal dependencies. No classes in dr.evolution.* packages should depend on classes in dr.evomodel.* or dr.inference.* or dr.evomodelxml. Also converted dr.evolution.coalescent.IntervalType to enum and minor other tidy ups.

362 lines of code changed in 2 files:

src/dr/evolution/sequence: Sequence.java (+174 -166), Sequences.java (+188 -180)

rambaut 2009-04-26 09:48 Rev.: 1639

Extended linking/unlinking to include trees by mirroring the setup we use for substitution models. Not complete yet so have included a static switch in DataPanel.ALLOW_UNLINKED_TREES which when false, reverts to the old GUI.

1 lines of code changed in 1 file:

src/dr/evolution/sequence: Sequences.java (+1 -1)

rambaut 2009-04-26 06:46 Rev.: 1638

Made some improvements to TaxonList and Taxa to make them work better with collections. For a start TaxonList is now Iterable so can be used in a for(Taxon taxon : taxonList) construct. In the long run we would be better dropping TaxonList and just replacing it with List<Taxon>.

33 lines of code changed in 1 file:

src/dr/evolution/sequence: Sequences.java (+33 -9)