StatSVN - Directory src/dr/app/treespace/

Lines of Code

src/dr/app/treespace/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	56 (100.0%)	2791 (100.0%)	49.8
rambaut	55 (98.2%)	2790 (100.0%)	50.7
dong.w.xie	1 (1.8%)	1 (0.0%)	1.0

Most Recent Commits

rambaut 2011-06-06 05:44 Rev.: 4007

Working towards Tracer 1.6. Switched trace 'types' (in the GUI) to 'real', 'integer' and 'categorical' as the previous ones were in programmers' jargon. These buttons also are now disabled when no trace is selected. Also disabled the confirmation box for setting types - if you press the button, then you probably intended to do it (this is a static switch at the top of the TracerFrame.java).

Cleaned up some issues with the generification of 'Variate' - in particular some methods in the plotting were not being overridden.

In 'distribution' tab, for real traces, KDEs are now the default. Histogram estimates can also be shown.

Options for plotting are now stored for specific traces (for example, if you set a manual range for a trace it is now remembered and used for this trace only).

Cleaned up some odd code in Skyline plotting (causing an erroneous warning box to appear).

Removed a few exclamation marks from dialog box messages and cleaned up the text.

117 lines of code changed in 6 files:

src/dr/app/treespace: TreeLineages.java (new), TreePlotter.java (new), TreeSpaceFrame.java (+7 -1)

rambaut 2011-04-27 02:23 Rev.: 3960

28 lines of code changed in 1 file:

src/dr/app/treespace: TreeLineages.java (+28 -28)

rambaut 2011-04-26 04:21 Rev.: 3956

Work on TreeSpace.

176 lines of code changed in 5 files:

src/dr/app/treespace: TreeLineages.java (+94 -17), TreePlotter.java (+23 -14), TreeSpaceApp.java (+57 -66), TreeSpaceFrame.java (+2)

rambaut 2011-04-25 23:56 Rev.: 3955

TreeSpace...

129 lines of code changed in 3 files:

src/dr/app/treespace: TreeLineages.java (+86 -39), TreePlotter.java (+40 -11), TreeSpaceFrame.java (+3 -3)

rambaut 2011-04-23 04:04 Rev.: 3954

58 lines of code changed in 3 files:

src/dr/app/treespace: TreeLineages.java (+23 -10), TreePlotter.java (+34 -26), TreeSpaceFrame.java (+1 -1)

rambaut 2011-04-23 01:29 Rev.: 3953

TreeSpace...

37 lines of code changed in 2 files:

src/dr/app/treespace: TreeLineages.java (+28 -3), TreePlotter.java (+9 -8)

rambaut 2011-04-22 04:30 Rev.: 3952

Work on TreeSpace.

174 lines of code changed in 3 files:

src/dr/app/treespace: TreeLineages.java (+63 -9), TreePlotter.java (+35 -61), TreeSpaceFrame.java (+76 -4)

rambaut 2011-04-22 02:59 Rev.: 3950

Work on TreeSpace app

337 lines of code changed in 6 files:

src/dr/app/treespace: CladePlotter.java (new 140), CladeSystem.java (+19 -2), TreeLineages.java (+47), TreePlotter.java (+126), TreeSpaceFrame.java (+5 -1)

dong.w.xie 2011-03-10 12:11 Rev.: 3863

Trunk: make micro-satellite file successfully loaded in BEAUti data panel.
Start to use jdk1.6 code.

1 lines of code changed in 1 file:

src/dr/app/treespace: TreeSpaceFrame.java (+1 -3)

rambaut 2011-02-15 05:09 Rev.: 3795

Pathogen updates

171 lines of code changed in 2 files:

src/dr/app/treespace: CladeSystem.java (+73 -8), TreeSpaceFrame.java (+98 -8)

rambaut 2011-01-26 21:28 Rev.: 3779

A bit of work on the 'TreeSpace' application.

640 lines of code changed in 9 files:

src/dr/app/treespace: CladePanel.java (new 152), CladeSystem.java (+220), InputFile.java (+7 -3), TimelinePanel.java (del), TreePanel.java (new 149), TreeSpaceDocument.java (new), TreeSpaceFrame.java (+103 -22)

rambaut 2010-12-14 02:43 Rev.: 3751

Minor modification

923 lines of code changed in 15 files:

src/dr/app/treespace: InputFile.java (+156), Location.java (del), MacFileMenuFactory.java (+105), OutputPanel.java (del), SpreadApp.java (del), SpreadDocument.java (del), SpreadFrame.java (del), SpreadMenuBarFactory.java (del), TimelinePanel.java (new 39), TreeSpaceApp.java (+119), TreeSpaceDocument.java (+56), TreeSpaceFrame.java (+418), TreeSpaceMenuBarFactory.java (new 30), layerspanel (del)