StatSVN - Directory src/dr/app/

[root]/src/dr/app

SnAPhyl (0 files, 0 lines)

datapanel (0 files, 0 lines)

images (4 files, 0 lines)

initializationpanel (0 files, 0 lines)

mcmcpanel (0 files, 0 lines)

operatorspanel (0 files, 0 lines)

priorsPanel (0 files, 0 lines)

util (0 files, 0 lines)

beagle (0 files, 0 lines)

evomodel (0 files, 0 lines)

branchmodel (5 files, 31 lines)

branchratemodel (0 files, 0 lines)

operators (1 files, -6 lines)

parsers (38 files, 850 lines)

sitemodel (6 files, 0 lines)

substmodel (35 files, 609 lines)

treelikelihood (14 files, 1342 lines)

utilities (4 files, 47 lines)

tools (3 files, -640 lines)

parsers (3 files, 25 lines)

beast (12 files, 719 lines)

beastdev (0 files, 0 lines)

beauti (7 files, 645 lines)

alignmentviewer (17 files, 1061 lines)

ancestralStatesPanel (2 files, 8 lines)

clockModelsPanel (3 files, 2 lines)

components (1 files, 13 lines)

ancestralstates (3 files, 79 lines)

continuous (4 files, 54 lines)

discrete (4 files, 38 lines)

dnds (0 files, 0 lines)

dollo (3 files, 68 lines)

hpm (4 files, 38 lines)

sequenceerror (3 files, 36 lines)

tipdatesampling (3 files, 63 lines)

datapanel (7 files, 110 lines)

enumTypes (0 files, 0 lines)

generator (17 files, 92 lines)

mcmcpanel (1 files, 0 lines)

modelsPanel (0 files, 0 lines)

operatorspanel (1 files, 0 lines)

options (25 files, 133 lines)

priorsPanel (8 files, 52 lines)

siteModelsPanel (3 files, -2 lines)

taxonsetspanel (2 files, 25 lines)

tipdatepanel (4 files, 125 lines)

traitspanel (5 files, 55 lines)

treespanel (7 files, 1 lines)

types (19 files, 409 lines)

util (11 files, 168 lines)

bfe (8 files, 744 lines)

bss (34 files, 619 lines)

icons (8 files, 0 lines)

test (1 files, -5 lines)

coalgen (8 files, 6 lines)

images (5 files, 0 lines)

gui (4 files, 61 lines)

chart (27 files, 1462 lines)

components (4 files, 11 lines)

table (8 files, 796 lines)

images (2 files, 0 lines)

tree (7 files, 1236 lines)

util (5 files, 376 lines)

java16compat (0 files, 0 lines)

mapper (0 files, 0 lines)

application (8 files, 2348 lines)

images (2 files, 0 lines)

mapper (5 files, 139 lines)

menus (4 files, 273 lines)

misc (1 files, 405 lines)

oldbeauti (22 files, 1363 lines)

images (4 files, 0 lines)

pathogen (12 files, 461 lines)

images (5 files, 0 lines)

phylogeography (0 files, 0 lines)

builder (0 files, 0 lines)

generator (0 files, 0 lines)

gui (0 files, 0 lines)

spread (0 files, 0 lines)

images (0 files, 0 lines)

inputpanel (0 files, 0 lines)

layerspanel (0 files, 0 lines)

renderpanel (0 files, 0 lines)

structure (0 files, 0 lines)

tools (8 files, 993 lines)

kml (9 files, 527 lines)

plugin (2 files, 1 lines)

seqgen (5 files, 32 lines)

tools (27 files, 2802 lines)

tracer (0 files, 0 lines)

analysis (13 files, 12 lines)

application (10 files, 61 lines)

images (2 files, 0 lines)

traces (18 files, 192 lines)

images (5 files, 0 lines)

treespace (12 files, 651 lines)

inputpanel (2 files, 389 lines)

renderpanel (1 files, 16 lines)

treestat (7 files, 2196 lines)

statistics (21 files, 1897 lines)

util (3 files, 712 lines)

vcs (3 files, 3 lines)

Author	Changes	Lines of Code	Lines per Change
Totals	3 (100.0%)	146 (100.0%)	48.6
alexei.drummond	2 (66.7%)	146 (100.0%)	73.0
rambaut	1 (33.3%)	0 (0.0%)	0.0

Most Recent Commits

rambaut 2010-06-02 22:53 Rev.: 3215

TreeTraits commit number 2. This one is a bit more wide ranging with potential to break things. 1) BranchAttributeProvider and NodeAttributeProvider have been deleted and replaced with a combination of TreeTraits and TreeTraitProviders. Sources implement TreeTraitProvider to say that they can provide information about nodes and branches. A good example of a class which has been generalized is AncestralState (in evomodel.treelikelihood) - this now just takes a TreeTrait and logs the trait for a given MRCA (the trait can be anything at all - whereas previously it took an AncestralStateTreeLikelihood).

0 lines of code changed in 1 file:

src/dr/app: ConvertMigrateTrees.java (del)

alexei.drummond 2010-04-13 17:29 Rev.: 3116

Small fixes to migrate conversion program

21 lines of code changed in 1 file:

src/dr/app: ConvertMigrateTrees.java (new 21)

alexei.drummond 2010-04-13 12:10 Rev.: 3115

Converter for Migrate trees that converts migrations to population reconstructions at internal nodes

125 lines of code changed in 1 file:

src/dr/app: ConvertMigrateTrees.java (+125)

Directory src/dr/app/

Lines of Code

Developers

Most Recent Commits