StatSVN - Directory src/dr/app/beauti/components/sequenceerror/

Lines of Code

src/dr/app/beauti/components/sequenceerror/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	16 (100.0%)	529 (100.0%)	33.0
rambaut	13 (81.3%)	487 (92.1%)	37.4
dong.w.xie	3 (18.8%)	42 (7.9%)	14.0

Most Recent Commits

rambaut 2012-03-02 05:02 Rev.: 4746

Fixed some issues with APOBEC error model generation.

5 lines of code changed in 4 files:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentGenerator.java (+4 -4), SequenceErrorModelComponentOptions.java (new)

rambaut 2012-02-03 11:02 Rev.: 4636

Fix for issue 570.

5 lines of code changed in 1 file:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentOptions.java (+5 -4)

dong.w.xie 2011-12-06 12:09 Rev.: 4508

trunk: solve Issue 555: Does sequence error model have to apply to every sequence data partition?

24 lines of code changed in 1 file:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentGenerator.java (+24 -21)

dong.w.xie 2011-12-05 13:52 Rev.: 4504

trunk:solve Issue 475: BEAUti hypervariable models do not fill in all necessary model attributes to run, and Issue 554: SequenceErrorModelComponentOptions did not create parameters properly

18 lines of code changed in 2 files:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentGenerator.java (+8 -6), SequenceErrorModelComponentOptions.java (+10 -8)

rambaut 2011-11-21 11:48 Rev.: 4461

More work on generating ancestral state reconstruction

4 lines of code changed in 1 file:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentOptions.java (+4)

rambaut 2011-11-21 00:03 Rev.: 4459

Starting to rebuild generation of robust counting.

10 lines of code changed in 1 file:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentOptions.java (+10 -1)

rambaut 2011-11-20 07:28 Rev.: 4456

Refactoring of the robust counting and sequence error model into a new tab ('States') which allows these options to be specified on a per partition basis. These options are still not finished yet but the panel can be hidden using the constant at the top of BeautiFrame.

167 lines of code changed in 2 files:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentGenerator.java (+106 -83), SequenceErrorModelComponentOptions.java (+61 -39)

rambaut 2011-11-07 03:44 Rev.: 4392

Cleaning up bugs in XML generation...

2 lines of code changed in 1 file:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentOptions.java (+2 -2)

rambaut 2011-09-16 03:04 Rev.: 4316

Continuous traits nearly working. Separated discrete traits out into a 'component' but will have broken things probably. Fixing up now.

294 lines of code changed in 3 files:

src/dr/app/beauti/components/sequenceerror: SequenceErrorModelComponentFactory.java (new 36), SequenceErrorModelComponentGenerator.java (+162), SequenceErrorModelComponentOptions.java (+96)