StatSVN - Directory src/dr/app/beauti/components/hpm/

Lines of Code

src/dr/app/beauti/components/hpm/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	15 (100.0%)	575 (100.0%)	38.3
msuchard	13 (86.7%)	570 (99.1%)	43.8
rambaut	2 (13.3%)	5 (0.9%)	2.5

Most Recent Commits

msuchard 2011-09-12 21:57 Rev.: 4305

Fixes to HPM specification in BEAUti

4 lines of code changed in 2 files:

src/dr/app/beauti/components/hpm: HierarchicalModelComponentGenerator.java (new)

rambaut 2011-06-24 20:49 Rev.: 4062

Some serious cleaning up of how priors are specified. This allows appropriate prior choices for different 'flavours' of parameters (non-negative, zero-one interval, discrete, HPM, CMTC rates). Truncation of the the prior is now a switch and bounds so can be applied to any prior (although the UI is not in place for this yet).

5 lines of code changed in 2 files:

src/dr/app/beauti/components/hpm: HierarchicalModelComponentOptions.java (new)

msuchard 2011-06-23 04:41 Rev.: 4060

Enabling basic hierarchical phylogenetics models by default

8 lines of code changed in 2 files:

src/dr/app/beauti/components/hpm: HierarchicalPhylogeneticModel.java (new)

msuchard 2011-06-22 17:04 Rev.: 4059

Mostly working hierarchical phylogenetic models

22 lines of code changed in 2 files:

src/dr/app/beauti/components/hpm: HierarchicalModelComponentGenerator.java (+16 -21), HierarchicalModelComponentOptions.java (+6 -1)

msuchard 2011-06-22 06:54 Rev.: 4058

Merged with latest bug fixed. Also implemented Component insertion points inside of the operatior schedule for specially formated operations.

289 lines of code changed in 3 files:

src/dr/app/beauti/components/hpm: HierarchicalModelComponentGenerator.java (+215 -5), HierarchicalModelComponentOptions.java (+56 -16), HierarchicalPhylogeneticModel.java (+18 -7)

msuchard 2011-06-20 16:21 Rev.: 4047

Intermediate work on implementing Hierarchical Phylogenetics Models in BEAUti

247 lines of code changed in 4 files:

src/dr/app/beauti/components/hpm: HierarchicalModelComponentFactory.java (new 36), HierarchicalModelComponentGenerator.java (+47), HierarchicalModelComponentOptions.java (+108), HierarchicalPhylogeneticModel.java (+56)