StatSVN - Directory src/dr/app/beauti/components/dnds/

Lines of Code

src/dr/app/beauti/components/dnds/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	20 (100.0%)	547 (100.0%)	27.3
fbielejec	11 (55.0%)	480 (87.8%)	43.6
msuchard	2 (10.0%)	55 (10.1%)	27.5
rambaut	7 (35.0%)	12 (2.2%)	1.7

Most Recent Commits

rambaut 2011-11-21 12:11 Rev.: 4463

Deleting component 'dnds' as this is now handled by 'ancestralstates'

0 lines of code changed in 3 files:

src/dr/app/beauti/components/dnds: DnDsComponentFactory.java (del), DnDsComponentGenerator.java (del), DnDsComponentOptions.java (del)

rambaut 2011-11-15 00:50 Rev.: 4418

Fixed a few issues with BSSVS generation. Also robust counting. Also unified the RECONSTRUCTION_TAG_NAME for the BEAGLE and non-BEAGLE versions of ASTL.

3 lines of code changed in 2 files:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (+3 -3)

rambaut 2011-11-10 21:50 Rev.: 4402

Only uses ancestralTreeLikelihood if robustCounting is selected for a particular partition model.

9 lines of code changed in 2 files:

src/dr/app/beauti/components/dnds: DnDsComponentOptions.java (new)

fbielejec 2011-08-08 20:17 Rev.: 4169

moved per site analysis report after mcmc block

1 lines of code changed in 1 file:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (+1 -1)

fbielejec 2011-08-08 20:04 Rev.: 4166

moved xml blocks around

13 lines of code changed in 1 file:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (+13 -10)

fbielejec 2011-08-03 13:13 Rev.: 4154

added default tags

0 lines of code changed in 1 file:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (-58)

fbielejec 2011-07-29 11:35

added flag setter

89 lines of code changed in 2 files:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (+62 -43), DnDsComponentOptions.java (+27 -20)

fbielejec 2011-07-02 12:37 Rev.: 4094

working on reflection based method overriding default setting

45 lines of code changed in 1 file:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (+45 -8)

fbielejec 2011-07-01 21:54 Rev.: 4092

fix for quotation marks

2 lines of code changed in 1 file:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (+2 -2)

fbielejec 2011-07-01 21:43 Rev.: 4091

added default tags

159 lines of code changed in 1 file:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (+159 -30)

msuchard 2011-07-01 15:37 Rev.: 4089

Connecting DnDsComponent into BEAUti GUI button

55 lines of code changed in 2 files:

src/dr/app/beauti/components/dnds: DnDsComponentGenerator.java (+30 -14), DnDsComponentOptions.java (+25 -20)

fbielejec 2011-07-01 03:15 Rev.: 4083

robust dNdS counting classes

171 lines of code changed in 3 files:

src/dr/app/beauti/components/dnds: DnDsComponentFactory.java (new 34), DnDsComponentGenerator.java (+83), DnDsComponentOptions.java (+54)