StatSVN - Directory src/dr/app/tracer/

Lines of Code

src/dr/app/tracer/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	34 (100.0%)	166 (100.0%)	4.8
rambaut	33 (97.1%)	137 (82.5%)	4.1
benjamin.redelings	1 (2.9%)	29 (17.5%)	29.0

Most Recent Commits

rambaut 2006-12-05 02:35 Rev.: 93

Committed the latest version of Tracer (v1.4). This is a large rewrite, uses Java 1.5 and JEBL/JAM. The original Tracer (v1.3) remains in Branches/1.4

0 lines of code changed in 27 files:

src/dr/app/tracer: AnalysisMenuFactory.java (del), AnalysisMenuHandler.java (del), BayesianSkylineDialog.java (del), CombinedTraces.java (del), CorrelationPanel.java (del), DemographicDialog.java (del), DemographicFrame.java (del), DemographicPlotPanel.java (del), DensityPanel.java (del), FrequencyPanel.java (del), IntervalsPanel.java (del), JIntervalsChart.java (del), JTraceChart.java (del), RawTracePanel.java (del), SummaryStatisticsPanel.java (del), TableRenderer.java (del), Trace.java (del), TraceCorrelation.java (del), TraceDistribution.java (del), TraceException.java (del), TraceList.java (del), TracePanel.java (del), TracerApp.java (del), TracerFrame.java (del), TracerMenuBarFactory.java (del), TracerMenuHandler.java (del), Traces.java (del)

rambaut 2006-12-04 10:54 Rev.: 87

A few modifications from Marc's ARG branch

70 lines of code changed in 3 files:

src/dr/app/tracer: CombinedTraces.java (new 24), TableRenderer.java (new 32), Trace.java (new 14)

rambaut 2006-12-04 09:38 Rev.: 83

Merged some fixes and improvements I made in the 1.4 branch in to the trunk. This includes the fix for Issue 8 in LogCombiner. Also, I have made some interfaces in the TreeColouring stuff so that other sources of TreeColouring (such as the Transmission history stuff) can provide coloured trees for logging.

67 lines of code changed in 3 files:

src/dr/app/tracer: DemographicFrame.java (new 22), JIntervalsChart.java (new 22), TraceCorrelation.java (new 23)

benjamin.redelings 2006-11-16 11:05 Rev.: 75

[SPEED] Calculate ESS faster in Tracer and LogAnalyzer

* src/dr/app/tracer/TraceCorrelation.java
+ analyseCorrelation( )
- merge stopping criterion into loop calculation of gammaStat[]
- for Tracer

* src/dr/inference/trace/TraceAnalysis.java
+ analyze( )
- merge stopping criterion into loop calculation of gammaStat[]
- for LogAnalyzer

This change makes the required CPU time less dependant on MAX_OFFSET.

29 lines of code changed in 1 file:

src/dr/app/tracer: TraceCorrelation.java (+29 -23)