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| Author | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 249 (100.0%) | 8625 (100.0%) | 34.6 |
| rambaut | 91 (36.5%) | 4140 (48.0%) | 45.4 |
| dong.w.xie | 109 (43.8%) | 2933 (34.0%) | 26.9 |
| alexei.drummond | 23 (9.2%) | 1166 (13.5%) | 50.6 |
| dong.w.xie@gmail.com | 8 (3.2%) | 156 (1.8%) | 19.5 |
| msuchard | 4 (1.6%) | 128 (1.5%) | 32.0 |
| jheled | 12 (4.8%) | 85 (1.0%) | 7.0 |
| benjamin.redelings | 1 (0.4%) | 15 (0.2%) | 15.0 |
| Michael.DefoinPLatel | 1 (0.4%) | 2 (0.0%) | 2.0 |
tracer: big correction of tracer code for my previous development on "Conditional Posterior Distributions", which fixed bugs in GUI especially in Filter, and use EDT thread.
156 lines of code changed in 8 files:
Trunk: update TraceAnalysis
5 lines of code changed in 4 files:
Visual tweaks.
7 lines of code changed in 2 files:
Didn't mean to remove the category labels
2 lines of code changed in 1 file:
Working towards Tracer 1.6. Switched trace 'types' (in the GUI) to 'real', 'integer' and 'categorical' as the previous ones were in programmers' jargon. These buttons also are now disabled when no trace is selected. Also disabled the confirmation box for setting types - if you press the button, then you probably intended to do it (this is a static switch at the top of the TracerFrame.java).
Cleaned up some issues with the generification of 'Variate' - in particular some methods in the plotting were not being overridden.
In 'distribution' tab, for real traces, KDEs are now the default. Histogram estimates can also be shown.
Options for plotting are now stored for specific traces (for example, if you set a manual range for a trace it is now remembered and used for this trace only).
Cleaned up some odd code in Skyline plotting (causing an erroneous warning box to appear).
Removed a few exclamation marks from dialog box messages and cleaned up the text.
223 lines of code changed in 8 files:
Trunk: fix a critical bug for new Tracer, Issue 459: new Tracer gives different statistics to previous version
16 lines of code changed in 1 file:
Trunk new Trace: fix some bugs.
7 lines of code changed in 3 files:
Trunk new Trace: more corrections to use 2d ArrayList ArrayList<ArrayList> not List[].
13 lines of code changed in 2 files:
Trunk new Trace: fix BSP plot in analysis, which should use 2d ArrayList ArrayList<ArrayList> not List[].
2 lines of code changed in 1 file:
Trunk new Trace: fix bug of returning double format for integer value, because Integer is stored as Double in Trace.
26 lines of code changed in 2 files:
Trunk new Trace: if combined traces exists, the filter has to be applied to all log files including combined traces, as Alexei advised.
51 lines of code changed in 4 files:
Trunk new Trace: finally fix the bug of FilterPanels not showing in FilterJDialog.
67 lines of code changed in 4 files:
Trunk new Trace: fix filter not working bug.
45 lines of code changed in 4 files:
Trunk new Tracer: fix the bug of missing possible values displayed in FilterDiscretePanel after filter applied.
6 lines of code changed in 1 file:
Trunk new Trace: make trace type change function working.
3 lines of code changed in 1 file:
Trunk new Trace: struggling with filter applied situation.
75 lines of code changed in 2 files:
Trunk new Trace: update Find Conditional Posterior Distributions... jdialog and jpanel and jtable, but panelParent cannot be repainted.
255 lines of code changed in 6 files:
Trunk new Trace: remove filter comb, add Find Conditional Posterior Distributions... in Analysis menu, create regarding jdialog and jpanel and jtable.
350 lines of code changed in 4 files:
Trunk new Trace: finally get rid of array copying functions getValues(?, [], ?) from Trace, which is memory consuming. Please use List<T> for your futher programming in Tracer.
0 lines of code changed in 1 file:
Trunk new Trace: 1) Try to replace Double[] as List<Double>, which save some memory, but it still crashes after loading a big log; 2) use traceType to detemine type, instead of prime type (T) of List<T> in Trace, and integer is stored as List<Double> currently for simlple solution of plotting.
119 lines of code changed in 9 files:
Trunk: starts using List instead array in Trace, and return List for getValues.
103 lines of code changed in 6 files:
Trunk: big change of new Tracer, and this check-in starts using List instead array in Variate.
38 lines of code changed in 6 files:
Trunk: new Tracer dev: solve some generic type casting problems.
30 lines of code changed in 5 files:
Trunk: new Tracer dev: make it complied, but there is still casting problem.
135 lines of code changed in 8 files:
Trunk: start a big operation on new Tracer
2 lines of code changed in 1 file:
Switched all uses of org.virion.jam.* to jam.* (org.virion.jam.* is not being updated or fixed). This has touched alot of files but mainly just in the import statements.
148 lines of code changed in 14 files:
A _very_ situation specific simulator for a project.
22 lines of code changed in 1 file:
Starting to integrate Marc's KDE additions into Tracer. To do this I have allowed DensityPanel to only display statistics of the same type (double, int or String) rather than just not display some statistics. KDE button only appears if continuous densities are being viewed. Next step I think is to cache KDE's to avoid recomputing.
870 lines of code changed in 7 files:
Forgot to wrapper one use of the KDE inside a compile-time remove flag.
3 lines of code changed in 1 file:
Started work on KDEs in Tracer
125 lines of code changed in 3 files:
TRUNK: new tracer dev: user guide.
1 lines of code changed in 1 file:
TRUNK: new tracer dev: fix remove all filters bug.
1 lines of code changed in 1 file:
TRUNK: new tracer: fixing status message bug after filter applied.
16 lines of code changed in 1 file:
TRUNK: new tracer dev: finish continuous value filter.
17 lines of code changed in 1 file:
TRUNK: new tracer dev: add continuous value panel in filter dialog.
42 lines of code changed in 1 file:
TRUNK: new tracer dev: fix filter plotting bug in all panels.
152 lines of code changed in 4 files:
TRUNK: new tracer dev: bug fixing again.
51 lines of code changed in 3 files:
TRUNK: new tracer dev: more bug fixing.
12 lines of code changed in 4 files:
TRUNK: new tracer dev: add filter status message.
7 lines of code changed in 1 file:
TRUNK: new tracer dev: fix filter plotting bug for single selected trace only.
38 lines of code changed in 2 files:
(36 more)