StatSVN - Directory src/dr/app/coalgen/

Lines of Code

src/dr/app/coalgen/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	64 (100.0%)	3824 (100.0%)	59.7
alexei.drummond	34 (53.1%)	3119 (81.6%)	91.7
rambaut	21 (32.8%)	669 (17.5%)	31.8
jheled	4 (6.3%)	18 (0.5%)	4.5
dong.w.xie	5 (7.8%)	18 (0.5%)	3.6

Most Recent Commits

dong.w.xie 2011-02-16 16:32 Rev.: 3804

Trunk: starts using List instead array in Trace, and return List for getValues.

17 lines of code changed in 4 files:

src/dr/app/coalgen: CoalGenApp.java (new), CoalGenFrame.java (+1 -2)

rambaut 2010-09-07 10:37 Rev.: 3497

Switched all uses of org.virion.jam.* to jam.* (org.virion.jam.* is not being updated or fixed). This has touched alot of files but mainly just in the import statements.

6 lines of code changed in 6 files:

src/dr/app/coalgen: DataPanel.java (new), ModelPanel.java (new), SimulationsPanel.java (new)

rambaut 2010-06-07 23:07 Rev.: 3235

Simplified TreeTrait interface to remove explicit dimensionality. If multidimensional traits are required then it needs to use double[] as the type.

249 lines of code changed in 4 files:

src/dr/app/coalgen: CoalGenApp.java (+171 -3), CoalGenData.java (+76 -66), CoalGenFrame.java (+2 -2)

dong.w.xie 2010-06-01 13:01 Rev.: 3204

TRUNK: new tracer dev merged from branch TRACER_NEW_DEV.

1 lines of code changed in 1 file:

src/dr/app/coalgen: CoalGenFrame.java (+1 -1)

alexei.drummond 2010-04-13 12:10 Rev.: 3115

Converter for Migrate trees that converts migrations to population reconstructions at internal nodes

15 lines of code changed in 2 files:

src/dr/app/coalgen: InputsPanel.java (+15 -13)

rambaut 2009-12-19 04:29 Rev.: 2708

Some very minor fixes

1 lines of code changed in 1 file:

src/dr/app/coalgen: CoalGenApp.java (+1 -1)

rambaut 2009-12-18 03:53 Rev.: 2704

Some work on an improved version of CoalGen.

411 lines of code changed in 9 files:

src/dr/app/coalgen: CoalGenApp.java (+1 -1), CoalGenData.java (+24 -5), CoalGenFrame.java (+32 -26), CoalGenMenuFactory.java (new), DataPanel.java (+107 -281), InputsPanel.java (+139), ModelPanel.java (+18 -26), SimulationsPanel.java (+87)

jheled 2009-05-07 07:47 Rev.: 1688

more common strings fun.
create method for writing an idref

3 lines of code changed in 1 file:

src/dr/app/coalgen: CoalGenData.java (+3 -2)

jheled 2008-04-26 23:10 Rev.: 828

oops should be with previous bunch

4 lines of code changed in 1 file:

src/dr/app/coalgen: CoalGenFrame.java (+4 -2)

alexei.drummond 2007-08-07 20:59 Rev.: 462

refactored coalgen to use same trace classes as tracer, added missing library

1039 lines of code changed in 10 files:

src/dr/app/coalgen: CoalGenApp.java (+4 -7), CoalGenData.java (+142 -139), CoalGenFrame.java (+270 -265), CoalGenMenuFactory.java (+15 -17), DataPanel.java (+473 -456), ModelPanel.java (+135 -135), Trace.java (del), TraceException.java (del), TraceList.java (del), Traces.java (del)

jheled 2007-01-19 07:48 Rev.: 150

change units type to an enum
Allow a log file name to be relative to main beast xml file when prefixed with a ./
minor jdoc and 1.5 cleanup

11 lines of code changed in 2 files:

src/dr/app/coalgen: CoalGenData.java (+4 -4), DataPanel.java (+7 -7)

rambaut 2006-12-05 22:08 Rev.: 104

Fixes to get everything compiling again

2 lines of code changed in 1 file:

src/dr/app/coalgen: DataPanel.java (+2 -2)

alexei.drummond 2006-12-05 09:53 Rev.: 95

error in exponentialPrior (issue 10) and new LocalBranchRates relaxed clock model

9 lines of code changed in 2 files:

src/dr/app/coalgen: CoalGenData.java (+6 -2), CoalGenFrame.java (+3 -2)

alexei.drummond 2006-11-03 13:07 Rev.: 66

fixed license headers

258 lines of code changed in 10 files:

src/dr/app/coalgen: CoalGenApp.java (+27 -8), CoalGenData.java (+26 -8), CoalGenFrame.java (+27 -6), CoalGenMenuFactory.java (+28 -6), DataPanel.java (+27 -7), ModelPanel.java (+27 -9), Trace.java (new 24), TraceException.java (new 24), TraceList.java (new 24), Traces.java (new 24)

alexei.drummond 2006-11-03 12:53 Rev.: 65

Added coalgen application back into the mix (after getting it compiling and running again)

1798 lines of code changed in 10 files:

src/dr/app/coalgen: CoalGenApp.java (+57), CoalGenData.java (+264), CoalGenFrame.java (+323), CoalGenMenuFactory.java (+39), DataPanel.java (+569), ModelPanel.java (+193), Trace.java (+72), TraceException.java (+16), TraceList.java (+40), Traces.java (+225)