Directory src/dr/app/phylogeography/builder/

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rambaut 2010-12-14 04:15 Rev.: 3754

Removed some redundant code (the prototype of an app for geo visualization).

0 lines of code changed in 7 files:

• src/dr/app/phylogeography/builder: AbstractBuilder.java (del), BuildException.java (del), Builder.java (del), BuilderFactory.java (del), ContinuousDiffusionTreeBuilder.java (del), DiscreteDiffusionTreeBuilder.java (del), DiscreteTreeBuilder.java (del)

rambaut 2010-09-09 23:27 Rev.: 3514

I forgot to change the package locations of some files copied in from elsewhere

1 lines of code changed in 2 files:

• src/dr/app/phylogeography/builder: Builder.java (+1 -1)

rambaut 2010-09-07 10:37 Rev.: 3497

Switched all uses of org.virion.jam.* to jam.* (org.virion.jam.* is not being updated or fixed). This has touched alot of files but mainly just in the import statements.

5 lines of code changed in 4 files:

• src/dr/app/phylogeography/builder: ContinuousDiffusionTreeBuilder.java (+3 -3), DiscreteDiffusionTreeBuilder.java (new)

alexei.drummond 2010-02-15 14:15 Rev.: 2912

LinkedList was horrifically slow in Polygon2D for polygons of >100000 vertices. Added a general KMLViewer...

7 lines of code changed in 1 file:

• src/dr/app/phylogeography/builder: ContinuousDiffusionTreeBuilder.java (+7 -5)

rambaut 2009-12-01 03:37 Rev.: 2636

Added drag and drop of log files into Tracer.

1 lines of code changed in 1 file:

• src/dr/app/phylogeography/builder: Builder.java (+1 -1)

rambaut 2009-11-26 11:55 Rev.: 2615

Refactoring work on SPREAD

16 lines of code changed in 5 files:

• src/dr/app/phylogeography/builder: Builder.java (+1 -1), BuilderFactory.java (new), ContinuousDiffusionTreeBuilder.java (+5), DiscreteDiffusionTreeBuilder.java (+5)

rambaut 2009-11-26 03:34 Rev.: 2610

Added icons to the SPREAD data table.

27 lines of code changed in 5 files:

• src/dr/app/phylogeography/builder: AbstractBuilder.java (new), Builder.java (+6 -9), ContinuousDiffusionTreeBuilder.java (+4 -4), DiscreteDiffusionTreeBuilder.java (+5 -5)

rambaut 2009-11-25 13:36 Rev.: 2596

SPREAD continues to develop

290 lines of code changed in 5 files:

• src/dr/app/phylogeography/builder: Builder.java (+4), BuilderFactory.java (+7), ContinuousDiffusionTreeBuilder.java (+143), DiscreteDiffusionTreeBuilder.java (+136), DiscreteTreeBuilder.java (del)

rambaut 2009-11-22 12:41 Rev.: 2578

Work progressing on SPREAD. Doesn't do anything useful yet but compiles and runs.

86 lines of code changed in 5 files:

• src/dr/app/phylogeography/builder: AbstractBuilder.java (+24 -11), BuildException.java (new 11), Builder.java (+9 -3), BuilderFactory.java (-4), DiscreteTreeBuilder.java (new 42)

rambaut 2009-11-20 05:10 Rev.: 2566

More slow, steady progress for 'SPREAD'.

76 lines of code changed in 4 files:

• src/dr/app/phylogeography/builder: AbstractBuilder.java (+59), Builder.java (+5), BuilderFactory.java (+2), DiscreteTreeBuilder.java (+10 -42)

rambaut 2009-11-19 05:02 Rev.: 2547

More slow, steady progress for 'SPREAD'.

12 lines of code changed in 1 file:

• src/dr/app/phylogeography/builder: DiscreteTreeBuilder.java (+12 -2)

rambaut 2009-11-19 04:45 Rev.: 2546

More slow, steady progress for 'SPREAD'.

8 lines of code changed in 3 files:

• src/dr/app/phylogeography/builder: Builder.java (+3 -1), BuilderFactory.java (+1 -1), DiscreteTreeBuilder.java (+4 -1)

rambaut 2009-11-13 01:28 Rev.: 2533

More SPREAD work.

71 lines of code changed in 3 files:

• src/dr/app/phylogeography/builder: Builder.java (+12), BuilderFactory.java (+18), DiscreteTreeBuilder.java (+41 -3)

rambaut 2009-11-11 00:06 Rev.: 2527

Added a new GUI-based phylogeography reconstruction application. This is not close to working yet but compiles.

97 lines of code changed in 2 files:

• src/dr/app/phylogeography/builder: Builder.java (+11), DiscreteTreeBuilder.java (+86)