Directory src/dr/app/treestat/

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alexei.drummond 2012-12-20 10:37 Rev.: 5288

Added warning about single-child internal nodes that is suppressed in TreeStat but active in BEAST-MCMC and other programs.

5 lines of code changed in 2 files:

• src/dr/app/treestat: TreeStatApp.java (+5)

alexei.drummond 2012-12-20 10:10 Rev.: 5287

Added SingleChildCountStatistic to TreeStat to support e.g. the counting of direct ancestors and nodes representing migration events.

1 lines of code changed in 2 files:

• src/dr/app/treestat: StatisticsPanel.java (new)

alexei.drummond 2011-07-29 08:51 Rev.: 4136

added Beta Diversity statistic to Tree Stat

1 lines of code changed in 1 file:

• src/dr/app/treestat: StatisticsPanel.java (+1 -1)

alexei.drummond 2011-07-29 08:07 Rev.: 4135

added Beta Diversity statistic to Tree Stat

3 lines of code changed in 1 file:

• src/dr/app/treestat: StatisticsPanel.java (+3 -2)

rambaut 2011-07-28 02:40 Rev.: 4125

Fix for issue 464: http://code.google.com/p/beast-mcmc/issues/detail?id=464

Set the default locale to US at the beginning of the main() of each of the applications. We don't currently do any localization and the use of a comma as a decimal in some places but not other for those languages that use this was causing major incompatibilities.

4 lines of code changed in 1 file:

• src/dr/app/treestat: TreeStatApp.java (+4 -1)

dong.w.xie 2010-09-22 12:54 Rev.: 3561

Trunk: merge issue 399 from branch 1.6

9 lines of code changed in 1 file:

• src/dr/app/treestat: TreeStatApp.java (+9 -2)

dong.w.xie 2010-09-15 16:28 Rev.: 3547

Trunk: fix build bug maing release failed

3 lines of code changed in 1 file:

• src/dr/app/treestat: TreeStatApp.java (+3 -5)

rambaut 2010-09-07 10:37 Rev.: 3497

Switched all uses of org.virion.jam.* to jam.* (org.virion.jam.* is not being updated or fixed). This has touched alot of files but mainly just in the import statements.

39 lines of code changed in 10 files:

• src/dr/app/treestat: CharactersPanel.java (new), StatisticsPanel.java (+2 -2), TaxonSetsPanel.java (+2 -2), TreeStatApp.java (+2 -2), TreeStatFrame.java (new), TreeStatPanel.java (+18 -18)

rambaut 2010-04-23 22:30 Rev.: 3131

More work on the hypermutation model.

8 lines of code changed in 2 files:

• src/dr/app/treestat: CharactersPanel.java (+3 -3), StatisticsPanel.java (+5 -5)

alexei.drummond 2009-11-09 14:17 Rev.: 2519

39 lines of code changed in 1 file:

• src/dr/app/treestat: StatisticsPanel.java (+39 -23)

jheled 2009-09-09 08:26 Rev.: 2227

generify and auto intelliJ

1 lines of code changed in 1 file:

• src/dr/app/treestat: TaxonSetsPanel.java (+1 -1)

dong.w.xie 2009-08-11 11:17 Rev.: 2053

Add OSType in dr.app.util to detect OS, and replace all old isMacOS into new one.

3 lines of code changed in 1 file:

• src/dr/app/treestat: TreeStatApp.java (+3 -1)

rambaut 2008-12-02 20:47 Rev.: 1349

Minor GUI tweaks

6 lines of code changed in 3 files:

• src/dr/app/treestat: StatisticsPanel.java (+2 -2), TaxonSetsPanel.java (+3 -3), TreeStatFrame.java (+1 -1)

jheled 2008-11-19 12:11 Rev.: 1318

Code Police

2 lines of code changed in 1 file:

• src/dr/app/treestat: TreeStatFrame.java (+2 -2)

rambaut 2008-11-18 04:44 Rev.: 1314

Fixing up TreeStat v1.2 for release.

187 lines of code changed in 3 files:

• src/dr/app/treestat: TaxonSetsPanel.java (+63 -61), TreeStatApp.java (+32 -16), TreeStatFrame.java (+92 -40)

rambaut 2008-11-16 00:12 Rev.: 1306

Added a statistic to TreeStat to obtain the mean of an attribute across a clade.

4 lines of code changed in 2 files:

• src/dr/app/treestat: StatisticsPanel.java (+3 -2), TreeStatApp.java (+1 -1)

rambaut 2008-10-20 00:35 Rev.: 1241

Made some improvements to TreeStat

382 lines of code changed in 1 file:

• src/dr/app/treestat: StatisticsPanel.java (+382 -434)

rambaut 2008-03-11 00:25 Rev.: 748

Added the ability to set an initial value to traits at nodes in TreeModel; Improved TreeAnnotator to use considerably less memory by making 3 passes of the tree file instead of 2; A few fixes to TreeStat to make it compile again.

0 lines of code changed in 2 files:

• src/dr/app/treestat: StatisticsPanel.java (-1), TaxonSetsPanel.java (-1)

jheled 2008-01-15 10:45 Rev.: 667

variable demographic stuff

10 lines of code changed in 2 files:

• src/dr/app/treestat: TreeStatData.java (new)

jheled 2008-01-15 10:28 Rev.: 658

java 5

19 lines of code changed in 1 file:

• src/dr/app/treestat: CharactersPanel.java (+19 -17)

rambaut 2007-11-20 21:57 Rev.: 618

Fixed up some generification of TreeStatData.

20 lines of code changed in 1 file:

• src/dr/app/treestat: TreeStatData.java (+20 -21)

jheled 2007-11-18 19:43 Rev.: 616

generify, get rid of warnings

42 lines of code changed in 1 file:

• src/dr/app/treestat: StatisticsPanel.java (+42 -39)

jheled 2007-11-18 19:40 Rev.: 614

generify

12 lines of code changed in 1 file:

• src/dr/app/treestat: TaxonSetsPanel.java (+12 -13)

rambaut 2007-06-28 03:21 Rev.: 331

More bits ported over from 1.4

12 lines of code changed in 1 file:

• src/dr/app/treestat: TreeStatApp.java (+12 -2)

rambaut 2006-12-05 22:08 Rev.: 104

Fixes to get everything compiling again

3 lines of code changed in 3 files:

• src/dr/app/treestat: CharactersPanel.java (+1 -1), StatisticsPanel.java (+1 -1), TaxonSetsPanel.java (+1 -1)

rambaut 2006-11-03 02:49 Rev.: 64

A few new stats in TreeStat (probably not much use to most people).

9 lines of code changed in 1 file:

• src/dr/app/treestat: StatisticsPanel.java (+9 -4)

rambaut 2006-10-30 09:46 Rev.: 62

Fixes to BEAUti - loads and saves taxon sets in template files.

422 lines of code changed in 1 file:

• src/dr/app/treestat: StatisticsPanel.java (+422 -374)