StatSVN - Directory src/dr/app/treestat/statistics/

Lines of Code

src/dr/app/treestat/statistics/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	58 (100.0%)	1869 (100.0%)	32.2
alexei.drummond	10 (17.2%)	935 (50.0%)	93.5
rambaut	32 (55.2%)	845 (45.2%)	26.4
jheled	14 (24.1%)	88 (4.7%)	6.2
dong.w.xie	2 (3.4%)	1 (0.1%)	0.5

Most Recent Commits

alexei.drummond 2012-12-20 10:11 Rev.: 5287

Added SingleChildCountStatistic to TreeStat to support e.g. the counting of direct ancestors and nodes representing migration events.

90 lines of code changed in 1 file:

src/dr/app/treestat/statistics: SingleChildCountStatistic.java (new 90)

alexei.drummond 2011-07-29 08:51 Rev.: 4136

added Beta Diversity statistic to Tree Stat

26 lines of code changed in 2 files:

src/dr/app/treestat/statistics: BetaTreeDiversityStatistic.java (+26 -1)

alexei.drummond 2011-07-29 08:07 Rev.: 4135

added Beta Diversity statistic to Tree Stat

172 lines of code changed in 1 file:

src/dr/app/treestat/statistics: BetaTreeDiversityStatistic.java (+172)

rambaut 2011-07-23 04:00 Rev.: 4116

uncommitting an erroneous revision

0 lines of code changed in 2 files:

src/dr/app/treestat/statistics: CladeMeanAttributeStatistic.java (new)

dong.w.xie 2010-09-10 16:29 Rev.: 3521

Trunk: solve Issue 382: Minor Typo in Treestat, and update Version history

1 lines of code changed in 2 files:

src/dr/app/treestat/statistics: B1Statistic.java (+1 -1)

alexei.drummond 2009-11-09 14:17 Rev.: 2519

594 lines of code changed in 4 files:

src/dr/app/treestat/statistics: ExternalBranchRates.java (new 142), InternalBranchLengths.java (new 145), InternalBranchRates.java (new 144), InternalNodeAttribute.java (new 163)

jheled 2009-09-09 08:26 Rev.: 2227

generify and auto intelliJ

5 lines of code changed in 2 files:

src/dr/app/treestat/statistics: DeltaStatistic.java (+5 -5)

jheled 2009-09-07 14:23 Rev.: 2218

automatic idea changes and generify

8 lines of code changed in 2 files:

src/dr/app/treestat/statistics: GammaStatistic.java (new)

alexei.drummond 2008-11-20 07:43 Rev.: 1320

handling of booleans

53 lines of code changed in 2 files:

src/dr/app/treestat/statistics: CladeMRCAAttributeStatistic.java (new)

jheled 2008-11-19 12:11 Rev.: 1318

Code Police

48 lines of code changed in 8 files:

src/dr/app/treestat/statistics: LineageCountStatistic.java (+12 -7), LineageProportionStatistic.java (+12 -7), MRCAOlderThanStatistic.java (+12 -7), RankProportionStatistic.java (new)

rambaut 2008-11-18 04:44 Rev.: 1314

Fixing up TreeStat v1.2 for release.

0 lines of code changed in 1 file:

src/dr/app/treestat/statistics: CladeAttributeStatistic.java (del)

rambaut 2008-11-16 00:12 Rev.: 1306

Added a statistic to TreeStat to obtain the mean of an attribute across a clade.

297 lines of code changed in 2 files:

src/dr/app/treestat/statistics: CladeMRCAAttributeStatistic.java (+144), CladeMeanAttributeStatistic.java (+153)

rambaut 2008-10-20 00:35 Rev.: 1241

Made some improvements to TreeStat

261 lines of code changed in 18 files:

src/dr/app/treestat/statistics: AbstractTreeSummaryStatistic.java (new), CladeAttributeStatistic.java (new 145), CoveringSubtreeSizeStatistic.java (del), IntervalKStatistic.java (new), LineageCountStatistic.java (+8 -4), LineageProportionStatistic.java (+8 -4), MRCAOlderThanStatistic.java (+8 -4), NodeHeights.java (+17), RankProportionStatistic.java (+12 -7), RootToTipLengths.java (new), TMRCASummaryStatistic.java (new), TreeSummaryStatistic.java (new)

jheled 2008-01-15 10:45 Rev.: 667

variable demographic stuff

27 lines of code changed in 2 files:

src/dr/app/treestat/statistics: TMRCASummaryStatistic.java (+26 -23), TreeSummaryStatistic.java (+1 -1)

rambaut 2007-06-28 03:21 Rev.: 331

More bits ported over from 1.4

7 lines of code changed in 2 files:

src/dr/app/treestat/statistics: DeltaStatistic.java (+5 -5), GammaStatistic.java (+2 -2)

rambaut 2006-11-03 02:49 Rev.: 64

A few new stats in TreeStat (probably not much use to most people).

175 lines of code changed in 3 files:

src/dr/app/treestat/statistics: LineageCountStatistic.java (+4 -4), LineageProportionStatistic.java (+86), MRCAOlderThanStatistic.java (+85)

rambaut 2006-10-30 09:46 Rev.: 62

Fixes to BEAUti - loads and saves taxon sets in template files.

105 lines of code changed in 4 files:

src/dr/app/treestat/statistics: IntervalKStatistic.java (+2), LineageCountStatistic.java (+85), RankProportionStatistic.java (+2), TreeSummaryStatistic.java (+16 -14)