StatSVN - Directory src/dr/app/beauti/components/dollo/

Lines of Code

src/dr/app/beauti/components/dollo/ Lines of Code

Author	Changes	Lines of Code	Lines per Change
Totals	10 (100.0%)	623 (100.0%)	62.3
msuchard	9 (90.0%)	620 (99.5%)	68.8
rambaut	1 (10.0%)	3 (0.5%)	3.0

msuchard 2013-02-01 05:08 Rev.: 5370

Proposed solution for handling multiple ambiguity codes in stochastic Dollo BEAUti generator

4 lines of code changed in 2 files:

msuchard 2012-08-18 06:32 Rev.: 5142

Due to lack of access to stochastic Dollo Alignment class to set printed ambiguity code, changing default ambiguity code to '-'.

2 lines of code changed in 1 file:

rambaut 2012-08-08 22:32 Rev.: 5113

Porting changes from branch 1.7 r5111 and r5112

3 lines of code changed in 1 file:

msuchard 2011-10-08 19:39 Rev.: 4342

Adding binary stochastic Dollo to BEAUti. Now can read Ringe dataset and generate an XML that runs.

284 lines of code changed in 3 files:

src/dr/app/beauti/components/dollo: DolloComponentGenerator.java (+224 -144), DolloComponentOptions.java (new)

msuchard 2011-09-09 06:05 Rev.: 4299

Fixed prior graphs in BEAUti, inverse gamma cdf and started stochastic Dollo

330 lines of code changed in 3 files:

src/dr/app/beauti/components/dollo: DolloComponentFactory.java (new 34), DolloComponentGenerator.java (+227), DolloComponentOptions.java (+69)