StatSVN - Directory src/dr/app/beauti/components/tipdatesampling/

Lines of Code

src/dr/app/beauti/components/tipdatesampling/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	12 (100.0%)	352 (100.0%)	29.3
rambaut	11 (91.7%)	351 (99.7%)	31.9
dong.w.xie	1 (8.3%)	1 (0.3%)	1.0

Most Recent Commits

rambaut 2013-05-16 08:25 Rev.: 5655

Fixed issue with creating leaf height parameters for multiple trees but the XML is not going to work. Probably need to disallow this in BEAUti.

0 lines of code changed in 2 files:

src/dr/app/beauti/components/tipdatesampling: TipDateSamplingComponentGenerator.java (new)

rambaut 2013-05-16 07:54 Rev.: 5654

Leaf taxa are only added to a treeModel if it has them.

26 lines of code changed in 1 file:

src/dr/app/beauti/components/tipdatesampling: TipDateSamplingComponentGenerator.java (+26 -11)

rambaut 2013-05-10 03:29 Rev.: 5642

Added parsing and setting of date precisions in BEAUti plus generation of uniform sampling within these bounds. Also fixed the date calculations so Jan 1st (say 2013) is 2013.0.

65 lines of code changed in 3 files:

src/dr/app/beauti/components/tipdatesampling: TipDateSamplingComponentGenerator.java (+8 -5), TipDateSamplingComponentOptions.java (new)

rambaut 2012-05-18 10:37 Rev.: 4985

Cleaned up the tipdate sampling options (the joint prior model wasn't generating code so hid this option). Removed requirement for taxon sets to be at least 2 taxa.

30 lines of code changed in 1 file:

src/dr/app/beauti/components/tipdatesampling: TipDateSamplingComponentGenerator.java (+30 -20)

dong.w.xie 2011-12-01 09:16 Rev.: 4498

trunk:solve Issue 553: BEAUti sampling on all individual tips should use randomWalkOperator

1 lines of code changed in 1 file:

src/dr/app/beauti/components/tipdatesampling: TipDateSamplingComponentOptions.java (+1 -1)

rambaut 2011-11-07 03:44 Rev.: 4392

Cleaning up bugs in XML generation...

2 lines of code changed in 1 file:

src/dr/app/beauti/components/tipdatesampling: TipDateSamplingComponentOptions.java (+2 -2)

rambaut 2011-09-16 03:04 Rev.: 4316

Continuous traits nearly working. Separated discrete traits out into a 'component' but will have broken things probably. Fixing up now.

228 lines of code changed in 3 files:

src/dr/app/beauti/components/tipdatesampling: TipDateSamplingComponentFactory.java (new 36), TipDateSamplingComponentGenerator.java (+97), TipDateSamplingComponentOptions.java (+95)