StatSVN - Directory src/dr/app/beauti/components/continuous/

Lines of Code

src/dr/app/beauti/components/continuous/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
rambaut	22 (100.0%)	831 (100.0%)	37.7

Most Recent Commits

rambaut 2013-05-11 02:10 Rev.: 5644

Added tool tip for lambda tree signal parameter check box.

7 lines of code changed in 4 files:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+2 -2), ContinuousComponentOptions.java (+5 -5)

rambaut 2013-05-10 22:32 Rev.: 5643

BEAUti: added Pagel's Lambda transform of tree shape to measure phylogenetic signal in continuous traits. Check box in sites panel for continuous trait partition. Lambda appears in priors table and operators table.

54 lines of code changed in 2 files:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+23 -3), ContinuousComponentOptions.java (+31)

rambaut 2013-02-15 12:47 Rev.: 5406

Ported recent updates from 1.7 branch

9 lines of code changed in 1 file:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+9 -6)

rambaut 2012-11-09 22:40 Rev.: 5219

Finished first implementation of new SubstitutionModelDelegate for BranchModels (which allow changing substitution model by branch).

100 lines of code changed in 1 file:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+100)

rambaut 2012-08-04 03:49 Rev.: 5097

Porting fixes from 1.7.3 back into the trunk

14 lines of code changed in 1 file:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+14 -4)

rambaut 2012-03-12 00:03 Rev.: 4815

Merging from 1.7 branch

6 lines of code changed in 1 file:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+6 -5)

rambaut 2011-11-20 07:28 Rev.: 4456

Refactoring of the robust counting and sequence error model into a new tab ('States') which allows these options to be specified on a per partition basis. These options are still not finished yet but the panel can be hidden using the constant at the top of BeautiFrame.

12 lines of code changed in 2 files:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+9 -14), ContinuousComponentOptions.java (+3 -8)

rambaut 2011-11-16 03:23 Rev.: 4432

Continuous trait generation now logs its branch rates with a different tag.

7 lines of code changed in 1 file:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+7)

rambaut 2011-11-15 09:42 Rev.: 4425

Missing DBRM from MTL in generated XML.

8 lines of code changed in 1 file:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+8 -28)

rambaut 2011-11-15 01:03 Rev.: 4419

Fixed initial parameter settings for continuous trait gammaRRW gamma distribution.

1 lines of code changed in 1 file:

src/dr/app/beauti/components/continuous: ContinuousComponentOptions.java (+1 -1)

rambaut 2011-11-11 22:06 Rev.: 4404

Fixes for continuous trait generation.

13 lines of code changed in 1 file:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+13 -11)

rambaut 2011-09-20 20:40 Rev.: 4324

More 1.7 work

17 lines of code changed in 2 files:

src/dr/app/beauti/components/continuous: ContinuousComponentGenerator.java (+13 -13), ContinuousComponentOptions.java (+4 -3)

rambaut 2011-09-16 03:04 Rev.: 4316

Continuous traits nearly working. Separated discrete traits out into a 'component' but will have broken things probably. Fixing up now.

583 lines of code changed in 4 files:

src/dr/app/beauti/components/continuous: ContinuousComponentFactory.java (new 34), ContinuousComponentGenerator.java (+464), ContinuousComponentOptions.java (+65), ContinuousSubstModelType.java (new 20)