Lines of Code
[root]/src/dr/inferencexml/operators
| Author | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 65 (100.0%) | 2192 (100.0%) | 33.7 |
| dong.w.xie | 34 (52.3%) | 1549 (70.7%) | 45.5 |
| akaruiws | 11 (16.9%) | 369 (16.8%) | 33.5 |
| alexander.alekseyenko | 3 (4.6%) | 85 (3.9%) | 28.3 |
| gcybis@yahoo.com.br | 1 (1.5%) | 77 (3.5%) | 77.0 |
| rambaut | 7 (10.8%) | 64 (2.9%) | 9.1 |
| msuchard | 5 (7.7%) | 35 (1.6%) | 7.0 |
| jheled | 4 (6.2%) | 13 (0.6%) | 3.2 |
Spelling.
1 lines of code changed in 2 files:
Hierarchical model for discrete trait
77 lines of code changed in 1 file:
Fixed integer overflow (when prior sampling) and mixed-math in RandomWalkOperator
2 lines of code changed in 2 files:
Attempting to standardize citations in BEAUti for a more professional look; am unclear why we did not stick with the Citable interface.
4 lines of code changed in 1 file:
Tidy up more msatBMA related things.
0 lines of code changed in 2 files:
Tidy up MsatBMA related things.
60 lines of code changed in 2 files:
Trunk: more big update on BEAUti microsat.
4 lines of code changed in 4 files:
Trunk: solve Issue 435: UniformIntegerOperator did not include upper in the value:
int newValue = MathUtils.nextInt(upper - lower) + lower;
Because nextInt(n) gives value [0, n-1], if upper = 2 then newValue cannot have 2.
The correct code should be
int newValue = MathUtils.nextInt(upper - lower + 1) + lower;
18 lines of code changed in 2 files:
Trunk: make Integer Parameter to allow to pass Variable<Integer>.
4 lines of code changed in 1 file:
Trunk: merge change.
1 lines of code changed in 2 files:
Fixed an issue where an IntegerRandomWalkOperator was actually just generating a RandomWalkOperator (the wrong string was being used).
3 lines of code changed in 1 file:
Started MV Polya Likelihood model
2 lines of code changed in 2 files:
Catch errors which lead to beast infinite loop or failure in parsers. more detailed error messages.
4 lines of code changed in 1 file:
add a new operator on sum constrained parameter, providing better mixing for multiscale parameters
83 lines of code changed in 1 file:
In the middle of trying to get BEAGLE's dynamic scaling to work in BEAST
13 lines of code changed in 1 file:
Added ability to set parameter-independent bounds on UniformOperator; should help prior sampling with a hard-boundary on rootHeight
16 lines of code changed in 1 file:
Gibbs sampling for a single msat ancestral state.
47 lines of code changed in 1 file:
Importance sampling for the msat ancestral states.
51 lines of code changed in 2 files:
Weighted random walk integer operators.
121 lines of code changed in 2 files:
Msat model averaging.
90 lines of code changed in 2 files:
Allow multiple moves in operator (via a user speciefied 'count')
8 lines of code changed in 1 file:
Make radius optional, as originally intended
1 lines of code changed in 2 files:
Trunk refactoring: finish MULTIVARIATE OU PROCESS (split parsers).
80 lines of code changed in 1 file:
Trunk refactoring: 3rd part of operators (split parsers).
587 lines of code changed in 11 files:
SetOperatorParser is wrongly named ('SetOperatorparser') - as this is a difference only in the case, I am changing it to another name and then back to the correct name. I have found that just changing the case can cause problems in some OSs.
60 lines of code changed in 2 files:
SetOperatorParser is wrongly named ('SetOperatorparser') - as this is a difference only in the case, I am changing it to another name and then back to the correct name. I have found that just changing the case can cause problems in some OSs.
0 lines of code changed in 2 files:
Trunk refactoring: 2nd part of operators (split parsers).
657 lines of code changed in 10 files:
Trunk refactoring: 1st part of operators (split parsers).
198 lines of code changed in 3 files: