StatSVN - Directory src/dr/inference/tutorial/

Lines of Code

src/dr/inference/tutorial/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	5 (100.0%)	127 (100.0%)	25.4
alexei.drummond	3 (60.0%)	126 (99.2%)	42.0
rambaut	2 (40.0%)	1 (0.8%)	0.5

Most Recent Commits

rambaut 2009-10-26 23:50 Rev.: 2471

Added a delay to the PerformanceReport in MCLogger. This is to skip the states when the JIT compiler is still optimizing. Currently this is set (in LoggerParser) to 5 x logEvery.

1 lines of code changed in 2 files:

src/dr/inference/tutorial: Tutorial1.java (new)

alexei.drummond 2009-07-19 21:50 Rev.: 1876

4 lines of code changed in 1 file:

src/dr/inference/tutorial: Tutorial1.java (+4 -4)

alexei.drummond 2009-07-19 21:08 Rev.: 1875

This is the slow part: converting each model to use Variable<Double> instead of Parameter. That is why Parameter is still around. This can be done over the next X commits/months/whatever.

40 lines of code changed in 1 file:

src/dr/inference/tutorial: Tutorial1.java (+40 -16)

alexei.drummond 2009-07-19 14:30 Rev.: 1873

Parameter -> Variable, Act 2 -- this is probably the biggest change made to core BEAST in a few years. So I tagged revision 1870 for convenience. Parameter is now basically obsoleted and should be replaced by DoubleVariable or Variable<Double> where appropriate. We can now also develop some Variable<Integer> and Variable<Boolean> et cetera so should be nice in the future... I have also added a Variable<double[]> for vectors and matrices. See dr.inference.tutorial.Tutorial1 for a first peek at programmable BEAST MCMC...

82 lines of code changed in 1 file:

src/dr/inference/tutorial: Tutorial1.java (+82)