Directory src/dr/evomodelxml/MSSD/

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msuchard 2012-11-28 10:34 Rev.: 5260

Incomplete implementation of multi-state stochastic Dollo under BEAGLE. Needs considerably more work.

3 lines of code changed in 2 files:

• src/dr/evomodelxml/MSSD: ALSTreeLikelihoodParser.java (+3 -3)

rambaut 2012-08-08 22:32 Rev.: 5113

Porting changes from branch 1.7 r5111 and r5112

121 lines of code changed in 1 file:

• src/dr/evomodelxml/MSSD: ALSSiteModelParser.java (new 121)

msuchard 2011-10-08 19:39 Rev.: 4342

Adding binary stochastic Dollo to BEAUti. Now can read Ringe dataset and generate an XML that runs.

27 lines of code changed in 1 file:

• src/dr/evomodelxml/MSSD: ALSTreeLikelihoodParser.java (+27 -1)

msuchard 2011-06-19 15:55 Rev.: 4044

Added (approx.) conditional reference prior for overall substitution rate scalar into BEAUti

1 lines of code changed in 2 files:

• src/dr/evomodelxml/MSSD: CTMCScalePriorParser.java (new)

dong.w.xie 2010-03-03 08:46 Rev.: 3012

Trunk refactoring: finish MSSD (split parsers).

339 lines of code changed in 5 files:

• src/dr/evomodelxml/MSSD: ALSTreeLikelihoodParser.java (+118), AnyTipObservationProcessParser.java (new 62), CTMCScalePriorParser.java (+53), ExponentialBranchLengthTreePriorParser.java (new 44), SingleTipObservationProcessParser.java (new 62)