StatSVN - Directory src/dr/evolution/distance/

Lines of Code

src/dr/evolution/distance/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	12 (100.0%)	393 (100.0%)	32.7
alexei.drummond	6 (50.0%)	322 (81.9%)	53.6
akaruiws	1 (8.3%)	35 (8.9%)	35.0
rambaut	3 (25.0%)	28 (7.1%)	9.3
jheled	2 (16.7%)	8 (2.0%)	4.0

Most Recent Commits

jheled 2009-08-06 08:22 Rev.: 2029

intellij auto

8 lines of code changed in 2 files:

src/dr/evolution/distance: JukesCantorDistanceMatrix.java (+8 -11)

akaruiws 2009-08-01 18:22 Rev.: 1978

Calculates SMM distance for microsatellite alleles

35 lines of code changed in 1 file:

src/dr/evolution/distance: SMMDistanceMatrix.java (new 35)

rambaut 2009-04-26 09:48 Rev.: 1639

Extended linking/unlinking to include trees by mirroring the setup we use for substitution models. Not complete yet so have included a static switch in DataPanel.ALLOW_UNLINKED_TREES which when false, reverts to the old GUI.

1 lines of code changed in 2 files:

src/dr/evolution/distance: DistanceMatrix.java (+1 -1)

rambaut 2009-04-26 06:46 Rev.: 1638

Made some improvements to TaxonList and Taxa to make them work better with collections. For a start TaxonList is now Iterable so can be used in a for(Taxon taxon : taxonList) construct. In the long run we would be better dropping TaxonList and just replacing it with List<Taxon>.

27 lines of code changed in 1 file:

src/dr/evolution/distance: DistanceMatrix.java (+27)

alexei.drummond 2008-07-12 01:49 Rev.: 989

Be very afraid: I have tidied up double and string attribute parsing in various classes. Hopefully no logic was changed, and I avoided code that couldn't be understood in a brief moment.

186 lines of code changed in 1 file:

src/dr/evolution/distance: DistanceMatrix.java (+186 -284)

alexei.drummond 2007-07-02 11:58 Rev.: 346

Updated manuscript and manual and cleaned up a bit of lint...

0 lines of code changed in 1 file:

src/dr/evolution/distance: DistanceMatrix.java (-2)

alexei.drummond 2007-06-26 23:42 Rev.: 328

Fixed 2 bugs in patristic distances code

15 lines of code changed in 2 files:

src/dr/evolution/distance: PatristicDistanceMatrix.java (+15 -6)

alexei.drummond 2007-06-24 19:21 Rev.: 300

Integration of Random Local Clock model into BEAUTi, plus a few improvements to TreeModel, SpeciationLikelihood and related classes

121 lines of code changed in 2 files:

src/dr/evolution/distance: DistanceMatrix.java (+12 -12), PatristicDistanceMatrix.java (+109)