StatSVN - Directory src/dr/evomodel/alternativesplicing/

Lines of Code

src/dr/evomodel/alternativesplicing/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	9 (100.0%)	584 (100.0%)	64.8
rambaut	3 (33.3%)	582 (99.7%)	194.0
jheled	2 (22.2%)	2 (0.3%)	1.0
alexander.alekseyenko	4 (44.4%)	0 (0.0%)	0.0

Most Recent Commits

alexander.alekseyenko 2008-08-22 22:32 Rev.: 1166

removing redundant files...

0 lines of code changed in 3 files:

src/dr/evomodel/alternativesplicing: ImmigrationIntegrationForAlternativeSplicingPrior.java (del), alsDefaultPrior.java (del), alsPriorLambdaIntegrator.java (del)

jheled 2008-05-28 09:51 Rev.: 899

Move getParameter and replaceParameter to AbstractXMLObjectParser - now used by multiple parsers

Renamed getSocketChild

Added generic 'public <T> T getAttribute(String name, T defaultValue)' to XMLObject - some usages of getXXXXattribute replaced. Update usage in your code if possible so we can one day remove the numerous getXXXXattribute

2 lines of code changed in 2 files:

src/dr/evomodel/alternativesplicing: ImmigrationIntegrationForAlternativeSplicingPrior.java (new)

alexander.alekseyenko 2008-04-07 21:48 Rev.: 805

Reorganized stuff into stochasticdollo.
'als' prefix stands for acquisition-loss-substitution, which is a synonym for multi-state stochastic Dollo. Hope this clarifies any confusion.

0 lines of code changed in 1 file:

src/dr/evomodel/alternativesplicing: alsDefaultPrior.java (del)

rambaut 2008-04-07 16:39 Rev.: 803

Cleaning up the dependencies a bit more (moved some tree stuff out of SimpleMCMCOperator into a new AbstractTreeOperator) and moved some Alternative Splicing stuff out of dr.inference.prior into a new package dr.evomodel.alternativesplicing (I suggest all of the alternative splicing should go in here).

582 lines of code changed in 3 files:

src/dr/evomodel/alternativesplicing: ImmigrationIntegrationForAlternativeSplicingPrior.java (+177), alsDefaultPrior.java (new 219), alsPriorLambdaIntegrator.java (new 186)