Directory src/dr/inferencexml/trace/

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baele.guy@gmail.com 2012-06-08 20:19 Rev.: 5027

Parser for the arithmetic mean estimator (AME).

133 lines of code changed in 1 file:

• src/dr/inferencexml/trace: ArithmeticMeanAnalysisParser.java (new 133)

tbcbedford@gmail.com 2012-02-10 06:06 Rev.: 4661

IntelliJ somehow missed the delete of aicmAnalysisParser.

0 lines of code changed in 1 file:

• src/dr/inferencexml/trace: aicmAnalysisParser.java (del)

tbcbedford@gmail.com 2012-02-09 05:51 Rev.: 4654

I've reverted MarginalLikelihoodAnalysisParser to previous functionality. It is now deprecated. It's been replaced by harmonicMeanAnalysis and aicmAnalysis.

263 lines of code changed in 4 files:

• src/dr/inferencexml/trace: AICMAnalysisParser.java (new 124), HarmonicMeanAnalysisParser.java (new 131), MarginalLikelihoodAnalysisParser.java (new)

tbcbedford@gmail.com 2012-02-09 03:29 Rev.: 4653

I added a new parser for AICM that calls a version of MarginalLikelihoodAnalysis behind the scenes. I thought this made more sense than specifying AICM with marginalLikelihoodAnalysis and analysisType. marginalLikelihoodAnalysis defaults to smoothed harmonic mean.

125 lines of code changed in 2 files:

• src/dr/inferencexml/trace: MarginalLikelihoodAnalysisParser.java (+1 -1), aicmAnalysisParser.java (new 124)

tbcbedford@gmail.com 2012-02-09 03:19 Rev.: 4652

Ensuring backwards compatability of MarginalLikelihoodAnalysis with harmonicOnly setting.

9 lines of code changed in 1 file:

• src/dr/inferencexml/trace: MarginalLikelihoodAnalysisParser.java (+9 -1)

tbcbedford@gmail.com 2011-12-15 04:05 Rev.: 4542

Implementing AICM in Tracer. The Bayes factor dialog now has a drop-down menu with AICM as the default option.

5 lines of code changed in 1 file:

• src/dr/inferencexml/trace: MarginalLikelihoodAnalysisParser.java (+5 -5)

dong.w.xie 2011-02-18 10:34 Rev.: 3808

Trunk new Trace: finally get rid of array copying functions getValues(?, [], ?) from Trace, which is memory consuming. Please use List<T> for your futher programming in Tracer.

2 lines of code changed in 1 file:

• src/dr/inferencexml/trace: MarginalLikelihoodAnalysisParser.java (+2 -2)

dong.w.xie 2011-02-16 16:32 Rev.: 3804

Trunk: starts using List instead array in Trace, and return List for getValues.

6 lines of code changed in 2 files:

• src/dr/inferencexml/trace: TraceAnalysisParser.java (new)

dong.w.xie 2011-02-15 09:08 Rev.: 3796

Trunk: big change of new Tracer, and this check-in starts using List instead array in Variate.

9 lines of code changed in 2 files:

• src/dr/inferencexml/trace: MarginalLikelihoodAnalysisParser.java (+2 -5), TraceAnalysisParser.java (+7 -3)

dong.w.xie 2011-02-04 10:09 Rev.: 3787

Trunk: new Tracer dev: solve some generic type casting problems.

2 lines of code changed in 1 file:

• src/dr/inferencexml/trace: TraceAnalysisParser.java (+2 -2)

dong.w.xie 2011-02-03 16:30 Rev.: 3785

Trunk: new Tracer dev: make it complied, but there is still casting problem.

4 lines of code changed in 2 files:

• src/dr/inferencexml/trace: MarginalLikelihoodAnalysisParser.java (+1 -1), TraceAnalysisParser.java (+3 -1)

dong.w.xie 2010-06-01 13:01 Rev.: 3204

TRUNK: new tracer dev merged from branch TRACER_NEW_DEV.

3 lines of code changed in 1 file:

• src/dr/inferencexml/trace: MarginalLikelihoodAnalysisParser.java (+3 -2)

msuchard 2010-03-08 08:16 Rev.: 3031

Added mean square error estimator to traceAnalysis; could build this feature into Tracer for users doing simulations

18 lines of code changed in 1 file:

• src/dr/inferencexml/trace: TraceAnalysisParser.java (+18 -7)

dong.w.xie 2010-03-02 13:21 Rev.: 3003

Trunk refactoring: finish trace (split parsers).

317 lines of code changed in 3 files:

• src/dr/inferencexml/trace: LogFileTraceExporterParser.java (new 52), MarginalLikelihoodAnalysisParser.java (+128), TraceAnalysisParser.java (+137)