October 2007 Commit Log

Number of Commits:
16
Number of Active Developers:
5
msuchard 2007-10-31 04:08 Rev.: 579

Started to add in classes for a multivate OU diffusion process and using Beast for doing (generalized) linear regression problems. May Beast become the new WinBugs!

4571 lines of code changed in 27 files:

Sebastian.Hoehna 2007-10-23 17:22 Rev.: 578

Updated the tree proposal moves. FNPR and Intermediate are added and the other test moves deleted.
The CladeMetric is added for counting the swaps for a clade.
The ConvergenceListener is added which measures the distance of split frequencies to a golden run. Both are used for statistical analysis for efficiency test on tree proposal distribution.

1114 lines of code changed in 10 files:

jheled 2007-10-19 12:29 Rev.: 577

fix comment

3 lines of code changed in 6 files:

alexei.drummond 2007-10-12 12:35 Rev.: 576

tidied up lint and added license header

906 lines of code changed in 8 files:

alexei.drummond 2007-10-12 12:21 Rev.: 575

Moved NodeRateProvider and BranchRateProvider to dr.evolution.tree because dr.evolution.* should not depend on dr.evomodel.* (plus minor other tidying)

2547 lines of code changed in 16 files:

rambaut 2007-10-12 04:08 Rev.: 574

Tracer tweaks

3 lines of code changed in 2 files:

rambaut 2007-10-12 03:09 Rev.: 573

Tracer tweaks

25 lines of code changed in 8 files:

rambaut 2007-10-12 00:19 Rev.: 572

More tweaks to the menu handling for auxilary windows in Tracer

36 lines of code changed in 4 files:

rambaut 2007-10-11 11:12 Rev.: 571

Made TemporalAnalysisFrame implement TracerFileMenuHandler so it will now export data and PDFs.

93 lines of code changed in 1 file:

rambaut 2007-10-11 11:07 Rev.: 570

Fixed problem with auxilary frames that weren't TracerFileMenuHandlers.

33 lines of code changed in 3 files:

rambaut 2007-10-11 10:59 Rev.: 569

Added rate density maps to TreeAnnotator and added sampling of transition times to RateEpochBranchRateModel

287 lines of code changed in 3 files:

msuchard 2007-10-04 16:03 Rev.: 568

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149 lines of code changed in 1 file:

msuchard 2007-10-04 16:00

239 lines of code changed in 3 files:

msuchard 2007-10-04 15:52 Rev.: 564

87 lines of code changed in 1 file:

msuchard 2007-10-04 15:36

multivariate OU process

352 lines of code changed in 3 files:

msuchard 2007-10-03 11:34 Rev.: 561

Added "normalize" attribute to FrequencyModel such that starting values can be normalized to sum to 1 if they do not already

132 lines of code changed in 1 file:

September 2007 »

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