December 2010 Commit Log

Number of Commits:
32
Number of Active Developers:
3
rambaut 2010-12-23 00:42 Rev.: 3768

Added a couple of switches (-contours & -points) to specify whether you want contours and/or points in the KML visualizations. This can be for slices, the root or the tips.

362 lines of code changed in 2 files:

rambaut 2010-12-22 11:38 Rev.: 3767

A touch more progress indication

16 lines of code changed in 1 file:

rambaut 2010-12-22 11:31 Rev.: 3766

Fixed a broken build.

41 lines of code changed in 1 file:

rambaut 2010-12-22 11:23 Rev.: 3765

Refactored TimeSlicer a bit to remove some repeated code (contour generation). Added the ability to summarize the root locations and tip locations independently of the slices (the '-root' and '-tips' options respectively).

350 lines of code changed in 2 files:

rambaut 2010-12-22 00:20 Rev.: 3764

Added a more informative error message for a command line option.

5 lines of code changed in 1 file:

rambaut 2010-12-22 00:04 Rev.: 3763

Minor tweaks to KML generation.

9 lines of code changed in 4 files:

rambaut 2010-12-21 22:48 Rev.: 3762

Fixed schema definitions for KML

2 lines of code changed in 1 file:

philippe.lemey@gmail.com 2010-12-21 09:34 Rev.: 3761

modifying KernelDensityEstimator2D constructor (that takes a gridsize argument) to set up bandwiths

1 lines of code changed in 1 file:

rambaut 2010-12-17 10:49 Rev.: 3760

A specific external/internal rate model to test an idea.

131 lines of code changed in 2 files:

dong.w.xie 2010-12-15 16:57 Rev.: 3759

Trunk: annother correction of MA

5 lines of code changed in 5 files:

dong.w.xie 2010-12-15 15:58 Rev.: 3758

Trunk: fix test and parser of MA

8 lines of code changed in 5 files:

dong.w.xie 2010-12-15 14:49 Rev.: 3757

Trunk: initial research on Model Averaging

757 lines of code changed in 6 files:

dong.w.xie 2010-12-15 14:46 Rev.: 3756

Trunk: revert an incorrect change on uniform and random walk integer operator on integer parameter part

92 lines of code changed in 6 files:

rambaut 2010-12-15 03:49 Rev.: 3755

Cached branches now defaults to true as some functionality won't work without it.

1 lines of code changed in 1 file:

rambaut 2010-12-14 04:15 Rev.: 3754

Removed some redundant code (the prototype of an app for geo visualization).

0 lines of code changed in 22 files:

rambaut 2010-12-14 04:12 Rev.: 3753

Tiny update to make TimeSlicer honour the default behaviour suggested for summary command line option.

1 lines of code changed in 1 file:

rambaut 2010-12-14 03:07 Rev.: 3752

Minor modification

2 lines of code changed in 1 file:

rambaut 2010-12-14 02:43 Rev.: 3751

Minor modification

1330 lines of code changed in 58 files:

dong.w.xie 2010-12-13 16:49 Rev.: 3748

Trunk: more for Issue 434

2 lines of code changed in 1 file:

dong.w.xie 2010-12-13 16:38 Rev.: 3747

Trunk: solve Issue 434: BEAUti: Initial value missing from prior dialog

21 lines of code changed in 3 files:

rambaut 2010-12-10 04:43 Rev.: 3746

Trying to get Evolutionary Cartography working...

109 lines of code changed in 5 files:

rambaut 2010-12-08 04:47 Rev.: 3745

minor edits

101 lines of code changed in 1 file:

rambaut 2010-12-08 01:04 Rev.: 3744

Made some arrays final to ensure things weren't being changed

13 lines of code changed in 4 files:

rambaut 2010-12-08 01:03 Rev.: 3743

Added a PCA statistic into the MDS

90 lines of code changed in 2 files:

rambaut 2010-12-07 04:15 Rev.: 3742

Added a cludge to specify two viruses that are fixed to x=0 in order to contrain rotational issues.

1 lines of code changed in 1 file:

rambaut 2010-12-07 03:58 Rev.: 3741

Added a cludge to specify two viruses that are fixed to x=0 in order to contrain rotational issues.

66 lines of code changed in 3 files:

rambaut 2010-12-06 01:07 Rev.: 3740

KML plotter for the antigenic MDS

384 lines of code changed in 2 files:

rambaut 2010-12-05 12:38 Rev.: 3739

Minor changes

6 lines of code changed in 2 files:

rambaut 2010-12-05 12:37 Rev.: 3738

Additional work on AntigenicMDS

96 lines of code changed in 1 file:

rambaut 2010-12-04 03:19 Rev.: 3737

Caching of partial calculations now seems to be working and provides a 2 fold speed up.

78 lines of code changed in 1 file:

rambaut 2010-12-04 02:15 Rev.: 3736

Made the tipTrait parameter optional so the AntigenicMDS can be done without the tree (i.e., independent points).

56 lines of code changed in 1 file:

dong.w.xie 2010-12-01 12:08 Rev.: 3734

Trunk: add Uniform Integer Operator Test

98 lines of code changed in 3 files:

November 2010 »

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