September 2007 Commit Log

Number of Commits:
25
Number of Active Developers:
3
alexei.drummond 2007-09-28 05:59 Rev.: 559

added <repeat count="x"> </repeat> command - but you can't use id attribute in elements that are enclosed by repeat...

324 lines of code changed in 1 file:

msuchard 2007-09-28 05:06 Rev.: 558

Changed NodeAttributeProvider to return String[] of labels and values. RLC model now returns "changed" as "true" and "false", TreeAnnotator should recognize these as Boolean.

1019 lines of code changed in 6 files:

rambaut 2007-09-28 04:54 Rev.: 557

TreeAnnotator now summarizes any attributes it finds

45 lines of code changed in 1 file:

alexei.drummond 2007-09-28 02:59 Rev.: 556

nasty rounding bug in DeltaExchangeOperator for the integer version of the operator -- I have separated the logic now...

15 lines of code changed in 1 file:

msuchard 2007-09-28 02:45 Rev.: 555

Fixed symmetry bug in InternalTraitGibbsOperator.

88 lines of code changed in 1 file:

msuchard 2007-09-28 01:41 Rev.: 554

Add a version of the general time-reversible CTMC that employs Bayesian stochastic variable selection to choose the appropriate number of free parameters. There are still some issues with priors/normalization to be worked out, but otherwise -- LET'S WRITE A PAPER!

BitFlipInSubstitutionModelOperator is only necessary if one wants to mandate an irreducible chain, otherwise BitFlipOperator works fine and almost surely returns irreducible chains.

454 lines of code changed in 4 files:

msuchard 2007-09-28 01:19 Rev.: 553

Fixed bug with rootPartials not being restored properly.

4 lines of code changed in 1 file:

msuchard 2007-09-28 00:59 Rev.: 552

55 lines of code changed in 1 file:

rambaut 2007-09-28 00:58 Rev.: 551

Added access to root partials

26 lines of code changed in 1 file:

msuchard 2007-09-28 00:16 Rev.: 550

Fixed double-quoting issue for discrete node properties

578 lines of code changed in 1 file:

rambaut 2007-09-27 05:08 Rev.: 549

Moved Marc's stuff into BEAST parser

5 lines of code changed in 2 files:

rambaut 2007-09-27 04:25 Rev.: 548

Moved Marc's stuff into BEAST parser

207 lines of code changed in 2 files:

msuchard 2007-09-27 03:16 Rev.: 547

Map stuff

1077 lines of code changed in 15 files:

alexei.drummond 2007-09-27 01:51 Rev.: 545

added test for lognormal prior

62 lines of code changed in 1 file:

alexei.drummond 2007-09-26 06:20 Rev.: 543

log normal bug!!

359 lines of code changed in 2 files:

alexei.drummond 2007-09-26 05:37 Rev.: 542

tree bit move operator comments

4 lines of code changed in 1 file:

rambaut 2007-09-26 04:57 Rev.: 541

Added treeBitMove to BEAUti

5 lines of code changed in 1 file:

alexei.drummond 2007-09-26 00:45 Rev.: 540

281 lines of code changed in 3 files:

alexei.drummond 2007-09-26 00:43 Rev.: 539

tree bit move operator and a few little improvements

496 lines of code changed in 6 files:

rambaut 2007-09-15 02:37 Rev.: 538

Some typos corrected in Book Section

13 lines of code changed in 2 files:

rambaut 2007-09-15 01:25 Rev.: 537

Some typos corrected in Book Section

69 lines of code changed in 3 files:

rambaut 2007-09-13 23:54 Rev.: 536

Some typos corrected in Book Section

13 lines of code changed in 2 files:

rambaut 2007-09-11 01:45 Rev.: 535

Added iText library for creating PDFs

0 lines of code changed in 1 file:

rambaut 2007-09-08 04:38 Rev.: 534

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148 lines of code changed in 10 files:

rambaut 2007-09-08 03:53 Rev.: 533

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297 lines of code changed in 10 files:

August 2007 »

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