March 2007 Commit Log

Number of Commits:

2

Number of Active Developers:

1

msuchard 2007-03-29 06:55 #2 Rev.: 218

LogNormal now defined in terms of either st dev or precision. I broke the LNVarianceOperator by adding a "degrees of freedom" to the ScaleOperator constructor -- now fixed.

462 lines of code changed in 3 files:

• src/dr/inference/distribution: LogNormalDistributionModel.java (+216 -130)
• src/dr/inference/operators: LNVarianceOperator.java (+27 -21), ScaleOperator.java (+219 -218)

msuchard 2007-03-21 11:36 #1 Rev.: 215

Added GMRFSkylineLikelihood and GMRFSkylineGibbsOperator classes to begin work on implementing a GMRF smoother on population size trajectories. The classes currently do not do anything.

357 lines of code changed in 2 files:

• src/dr/evomodel/coalescent: GMRFSkylineLikelihood.java (+178)
• src/dr/evomodel/coalescent/operators: GMRFSkylineGibbsOperator.java (+179)

February 2007 »