/trunk Developers: philippe.lemey@gmail.com

Login name:
philippe.lemey@gmail.com
Total Commits:
95 (0.4%)
Lines of Code:
10,056 (0.9%)
Most Recent Commit:
2013-03-28 01:22
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 95 (100.0%) 10056 (100.0%) 105.8
src/dr/app/tools/ 29 (30.5%) 3886 (38.6%) 134.0
examples/Phylogeography/continuous/ 10 (10.5%) 3028 (30.1%) 302.8
src/dr/inference/trace/ 12 (12.6%) 1422 (14.1%) 118.5
examples/Phylogeography/ 2 (2.1%) 1138 (11.3%) 569.0
src/dr/geo/ 18 (18.9%) 336 (3.3%) 18.6
src/dr/app/beagle/evomodel/utilities/ 2 (2.1%) 113 (1.1%) 56.5
src/dr/evomodel/continuous/ 4 (4.2%) 57 (0.6%) 14.2
src/dr/inference/operators/ 1 (1.1%) 46 (0.5%) 46.0
src/dr/app/beagle/evomodel/parsers/ 2 (2.1%) 9 (0.1%) 4.5
src/dr/app/beauti/ancestralStatesPanel/ 2 (2.1%) 8 (0.1%) 4.0
src/dr/app/beast/ 3 (3.2%) 7 (0.1%) 2.3
src/dr/app/beagle/tools/ 1 (1.1%) 4 (0.0%) 4.0
src/dr/evomodel/transmission/ 3 (3.2%) 2 (0.0%) 0.6
examples/release/Phylogeography/continuous/ 6 (6.3%) 0 (0.0%) 0.0

Activity of philippe.lemey@gmail.com

Most Recent Commits

philippe.lemey@gmail.com 2013-03-28 01:22 Rev.: 5547

Transmission statistic now updates the transmission history and accomodates estimated transmission times

1 lines of code changed in 2 files:

  • src/dr/evomodel/transmission: TransmissionStatistic.java (new)
philippe.lemey@gmail.com 2013-03-28 00:56 Rev.: 5546

text message changes for the renaissance counting method in AncestralStatesOptionsPanel

1 lines of code changed in 1 file:

  • src/dr/evomodel/transmission: TransmissionStatistic.java (+1 -1)
philippe.lemey@gmail.com 2013-02-14 08:04 Rev.: 5395

text message changes for the renaissance counting method in AncestralStatesOptionsPanel

8 lines of code changed in 2 files:

  • src/dr/app/beauti/ancestralStatesPanel: AncestralStatesOptionsPanel.java (+8 -8)
philippe.lemey@gmail.com 2012-03-14 23:00 Rev.: 4836

tweaking dnds trace analysis

72 lines of code changed in 2 files:

  • src/dr/inference/trace: DnDsPerSiteAnalysis.java (+72 -14)
philippe.lemey@gmail.com 2011-11-25 02:25 Rev.: 4488

Updating DnDsLoggerParser

6 lines of code changed in 1 file:

  • src/dr/app/beagle/evomodel/parsers: DnDsLoggerParser.java (+6 -1)
philippe.lemey@gmail.com 2011-11-25 00:38 Rev.: 4487

adding CnCsPerSiteAnalysis to parser list

2 lines of code changed in 1 file:

  • src/dr/app/beast: release_parsers.properties (+2 -1)
philippe.lemey@gmail.com 2011-11-25 00:35 Rev.: 4486

adding the possibility to log syn and nonsyn conditional/unconditional counts to DnDsLogger

102 lines of code changed in 1 file:

  • src/dr/app/beagle/evomodel/utilities: DnDsLogger.java (+102 -4)
philippe.lemey@gmail.com 2011-11-25 00:28 Rev.: 4485

adding a trace analysis for syn and nonsyn counts

445 lines of code changed in 1 file:

  • src/dr/inference/trace: CnCsPerSiteAnalysis.java (new 445)
philippe.lemey@gmail.com 2011-08-11 07:06 Rev.: 4181

adding custom burn-in to DnDsPerSiteAnalysis

27 lines of code changed in 1 file:

  • src/dr/inference/trace: DnDsPerSiteAnalysis.java (+27 -20)
philippe.lemey@gmail.com 2011-03-19 07:51 Rev.: 3883

reverting ContourMaker in TimeSlicer back to no bandwidth limit

4 lines of code changed in 2 files:

  • src/dr/app/tools: TimeSlicer.java (+4 -4)
philippe.lemey@gmail.com 2011-03-18 22:34 Rev.: 3882

adding ContourMaker with bandwidth limit to TimeSlicer

34 lines of code changed in 1 file:

  • src/dr/app/tools: TimeSlicer.java (+34 -6)
philippe.lemey@gmail.com 2011-03-05 01:16 Rev.: 3859

more DnDsPerSiteAnalysis tweaking

4 lines of code changed in 1 file:

  • src/dr/inference/trace: DnDsPerSiteAnalysis.java (+4 -4)
philippe.lemey@gmail.com 2011-03-02 22:53 Rev.: 3846

mor DnDsPerSiteAnalysis tweaking

55 lines of code changed in 1 file:

  • src/dr/inference/trace: DnDsPerSiteAnalysis.java (+55 -12)
philippe.lemey@gmail.com 2011-03-02 01:16 Rev.: 3842

DnDsPerSiteAnalysis tweaking

110 lines of code changed in 1 file:

  • src/dr/inference/trace: DnDsPerSiteAnalysis.java (+110 -16)
philippe.lemey@gmail.com 2011-02-20 05:06

tiny DnDsLog tweak

14 lines of code changed in 2 files:

  • src/dr/app/beagle/evomodel/parsers: DnDsLoggerParser.java (+3 -1)
  • src/dr/app/beagle/evomodel/utilities: DnDsLogger.java (+11 -3)
philippe.lemey@gmail.com 2010-12-21 09:34 Rev.: 3761

modifying KernelDensityEstimator2D constructor (that takes a gridsize argument) to set up bandwiths

1 lines of code changed in 1 file:

  • src/dr/geo: KernelDensityEstimator2D.java (+1 -1)
philippe.lemey@gmail.com 2010-11-20 01:26 Rev.: 3728

Adding -/N/+ classification to DnDsPerSiteAnalysis

52 lines of code changed in 1 file:

  • src/dr/inference/trace: DnDsPerSiteAnalysis.java (+52 -11)
philippe.lemey@gmail.com 2010-11-15 21:48 Rev.: 3718

TimeSlicer update for compatibility with Google Earth 5.2 / cartographica

1 lines of code changed in 1 file:

  • src/dr/app/tools: TimeSlicer.java (+1 -1)
philippe.lemey@gmail.com 2010-10-26 00:12 Rev.: 3672

TimeSlicer update for compatibility with Google Earth 5.2 / cartographica

37 lines of code changed in 1 file:

  • src/dr/app/tools: TimeSlicer.java (+37 -9)
philippe.lemey@gmail.com 2010-10-23 23:35 Rev.: 3667

TimeSlicer update for compatibility with Google Earth 5.2

43 lines of code changed in 2 files:

  • src/dr/geo: Polygon2D.java (new)

(51 more)

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