| Directory | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 110 (100.0%) | 15206 (100.0%) | 138.2 |
| src/dr/evomodel/operators/ | 46 (41.8%) | 6364 (41.9%) | 138.3 |
| src/dr/evolution/tree/ | 20 (18.2%) | 3949 (26.0%) | 197.4 |
| src/dr/inference/loggers/ | 10 (9.1%) | 2041 (13.4%) | 204.1 |
| src/test/dr/evomodel/operators/ | 13 (11.8%) | 1397 (9.2%) | 107.4 |
| src/dr/inference/markovchain/ | 7 (6.4%) | 728 (4.8%) | 104.0 |
| src/dr/app/beast/ | 4 (3.6%) | 364 (2.4%) | 91.0 |
| src/dr/evomodel/tree/ | 6 (5.5%) | 190 (1.2%) | 31.6 |
| src/dr/inference/operators/ | 3 (2.7%) | 163 (1.1%) | 54.3 |
| / | 1 (0.9%) | 10 (0.1%) | 10.0 |
More stuff from my Masters project ...
845 lines of code changed in 4 files:
Some more stuff on the tree proposal operators. Commiting sources from Masters project and some clean ups.
Remark: CCPImportanceDistributionOperator is working, but not efficient. Further work needs to be done.
1144 lines of code changed in 4 files:
Tidying up to resolve more the confusion between the Gibbs and Metropolized Gibbs Proposals.
3 lines of code changed in 2 files:
Change name of SimpleGibbsOperator to SimpleMetropolizedGibbsOperator to avoid confusion.
167 lines of code changed in 5 files:
Some more work on the tree proposal operators
94 lines of code changed in 1 file:
Added some stuff to get the MGS working.
288 lines of code changed in 1 file:
Some work on convergence measurements
827 lines of code changed in 5 files:
Added a quick but dirty endTreeEdit which increases the performance of the Metropolized Gibbs Sampler by 2 even for small datasets.
15 lines of code changed in 1 file:
Some work on the tree proposal operators.
95 lines of code changed in 1 file:
Work on the new tree proposal operators. The two Metropolized Gibbs Samplers and the CCP guided samplers.
1240 lines of code changed in 4 files:
Some work on the tree proposal operators.
269 lines of code changed in 1 file:
A general framework for importance distributions by clades. It is used for the Metropolized Independence Sampler.
589 lines of code changed in 2 files:
The WMB is the method used in TreeAnnotator. I designed this class in the same way as the CCP for estimating the posterior of trees.
645 lines of code changed in 1 file:
Some work on the conditional clade frequencies.
338 lines of code changed in 3 files:
Added the new Tree Proposal Operators
353 lines of code changed in 1 file:
Error catching stuff.
6 lines of code changed in 1 file:
A new kind of tree proposal operators. Still working on it ...
1015 lines of code changed in 7 files:
Tests for the tree operators
931 lines of code changed in 8 files:
Some work on the tree operators.
182 lines of code changed in 10 files:
Some new operators, but still under development. A little tigying up in the old stuff and some minor corrections.
1630 lines of code changed in 10 files:
(11 more)