Directory src/test/dr/evomodel/operators/

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dong.w.xie 2010-12-15 15:58 Rev.: 3758

Trunk: fix test and parser of MA

5 lines of code changed in 2 files:

• src/test/dr/evomodel/operators: UniformIntegerOperatorTest.java (+5 -5)

dong.w.xie 2010-12-01 12:08 Rev.: 3734

Trunk: add Uniform Integer Operator Test

80 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: UniformIntegerOperatorTest.java (+80)

dong.w.xie 2010-02-19 14:41 Rev.: 2943

Trunk refactoring: finish coalescent (split parsers).

5 lines of code changed in 2 files:

• src/test/dr/evomodel/operators: OperatorAssert.java (new)

dong.w.xie 2010-02-09 14:01 Rev.: 2904

Trunk: disable another test class with problem.

122 lines of code changed in 2 files:

• src/test/dr/evomodel/operators: GibbsSubtreeSwapTest.java (del), GibbsSubtreeSwapTestProblem.java (new 122)

dong.w.xie 2010-02-09 12:55 Rev.: 2903

Trunk: enable more test of Operator and disable 2 test classes with problem.

302 lines of code changed in 4 files:

• src/test/dr/evomodel/operators: ImportancePruneAndRegraftTest.java (del), ImportancePruneAndRegraftTestProblem.java (new 150), ImportanceSubtreeSwapTest.java (del), ImportanceSubtreeSwapTestProblem.java (new 152)

dong.w.xie 2010-02-03 10:11 Rev.: 2876

Trunk: hide the confused constructor from MCMC.

1 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: OperatorAssert.java (+1 -2)

dong.w.xie 2010-01-21 13:11 Rev.: 2827

Trunk: fix seed for integration test, and see whether to solve unstable Hudson test.

3 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: OperatorAssert.java (+3)

rambaut 2009-12-12 02:12 Rev.: 2692

Failed to update a few files after last commit..

11 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: OperatorAssert.java (+11 -13)

dong.w.xie 2009-12-10 13:44 Rev.: 2678

Trunk: start merge BEAUti from branch 1.5 in

1 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: ImportanceSubtreeSwapTest.java (new 1)

rambaut 2009-10-03 00:23 Rev.: 2341

Replaced 'preBurnin' with an autoOptimizeDelay (coercionDelay). The rationale for this is that the preBurnin meant that the initial state was not in the log files, it was unecessary and it cause a small inefficiency as the JIT compiler re-optimized after the preburnin chain had finished. We also didn't see warning messages until after the pre-burnin period. There is a new attribute to the MCMC parser - autoOptimizeDelay (to which the old preBurnin attribute now maps so old XML will run).

1 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: OperatorAssert.java (+1 -1)

jheled 2009-07-24 11:15 Rev.: 1909

Intellij auto changes

1 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: OperatorAssert.java (+1 -1)

jheled 2009-07-24 11:06 Rev.: 1906

Add types of trees to birth-death density

2 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: OperatorAssert.java (+2 -1)

dong.w.xie 2009-04-17 14:48 Rev.: 1590

Correct more JUnit test.

209 lines of code changed in 13 files:

• src/test/dr/evomodel/operators: ExchangeOperatorTest.java (new), FNPRTest.java (+1 -1), GibbsSubtreeSwapTest.java (new 4), ImportancePruneAndRegraftTest.java (new 1), ImportanceSubtreeSwapTest.java (+1 -1), NNITest.java (new), NarrowExchangeTest.java (new), OperatorAssert.java (+197), OperatorTest.java (del)

jheled 2009-03-07 08:21 Rev.: 1482

temporary commit until sebastian sorts this out

2 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: GibbsSubtreeSwapTest.java (+2 -2)

jheled 2009-02-13 14:28 Rev.: 1431

Sampling proportion added to Birth-Death, based on Tanja derivation. Not tested by simulation. Expressions are identical to the ones pre-change when the default proportion (1) is used.

10 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: OperatorTest.java (new 10)

jheled 2008-11-01 06:13 Rev.: 1267

Remove depracated use of constant demographic in Wilson Balding operator
Merge some uses of the "rootHeight" constant string

3 lines of code changed in 2 files:

• src/test/dr/evomodel/operators: ExchangeOperatorTest.java (+1 -1), OperatorTest.java (+2 -1)

Sebastian.Hoehna 2008-09-03 17:53 Rev.: 1178

A new kind of tree proposal operators. Still working on it ...

0 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: ImportancesubtreeSwapTest.java (del)

Sebastian.Hoehna 2008-09-03 17:50 Rev.: 1177

Tests for the tree operators

931 lines of code changed in 8 files:

• src/test/dr/evomodel/operators: ExchangeOperatorTest.java (+166 -264), FNPRTest.java (+24 -38), GibbsSubtreeSwapTest.java (+122), ImportancePruneAndRegraftTest.java (+150), ImportanceSubtreeSwapTest.java (+152), NNITest.java (+25 -40), NarrowExchangeTest.java (+96), OperatorTest.java (+196)

alexei.drummond 2008-08-17 23:55 Rev.: 1153

added ability to specify the number of decimal places for branch lengths in the newick format and tree logger. also some tidying

1 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: ExchangeOperatorTest.java (+1 -1)

alexei.drummond 2008-08-16 02:58 Rev.: 1139

tweaks

30 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: ExchangeOperatorTest.java (+30 -32)

Sebastian.Hoehna 2008-08-15 18:42 Rev.: 1137

New test cases for the NNI, FNPR and ImportanceSubtreeSwap operators.

402 lines of code changed in 3 files:

• src/test/dr/evomodel/operators: FNPRTest.java (+127), ImportancesubtreeSwapTest.java (new 165), NNITest.java (+110)

Sebastian.Hoehna 2008-08-15 12:44 Rev.: 1136

This test case shows the bug in the Wide Exchange!

64 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: ExchangeOperatorTest.java (+64 -6)

alexei.drummond 2008-08-15 03:44 Rev.: 1130

added new tests for wide exchange operator in ExchangeOperatorTest and YuleModelTest... I would encourage other BEAST developers to consider writing JUnit tests... they are easy and fun!

127 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: ExchangeOperatorTest.java (+127 -9)

alexei.drummond 2008-08-14 09:28 Rev.: 1125

added ExchangeOperatorTest

90 lines of code changed in 1 file:

• src/test/dr/evomodel/operators: ExchangeOperatorTest.java (+90)