| Directory | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 25 (100.0%) | 965 (100.0%) | 38.6 |
| src/dr/evomodel/speciation/ | 15 (60.0%) | 738 (76.5%) | 49.2 |
| src/dr/app/tools/ | 2 (8.0%) | 129 (13.4%) | 64.5 |
| src/dr/evomodelxml/speciation/ | 3 (12.0%) | 30 (3.1%) | 10.0 |
| src/dr/evolution/tree/ | 2 (8.0%) | 26 (2.7%) | 13.0 |
| src/dr/inference/distribution/ | 1 (4.0%) | 21 (2.2%) | 21.0 |
| src/dr/inference/model/ | 1 (4.0%) | 12 (1.2%) | 12.0 |
| src/dr/inference/loggers/ | 1 (4.0%) | 9 (0.9%) | 9.0 |
Add '-heights ca' option to set heights which do not suffer from the "negative branches" problem. citation later ....
149 lines of code changed in 3 files:
Improve report sent by BEAST when initial posterior is infinite
44 lines of code changed in 4 files:
A terrible hack which disables 2d HPD for the dmv attribute (by name)
6 lines of code changed in 1 file:
fix setting of pop sizes with constant
2 lines of code changed in 1 file:
Add an alternative exact marginal
112 lines of code changed in 4 files:
more fixes to calibration code
37 lines of code changed in 5 files:
species tree taxa references in XML work now
2 lines of code changed in 1 file:
Report speed per 10^9 for fast runs
9 lines of code changed in 1 file:
Add first version for exact marginal for the general case of N monophyletic clades
604 lines of code changed in 5 files: