StatSVN - Directory src/test/dr/evomodel/branchratemodel/

Lines of Code

src/test/dr/evomodel/branchratemodel/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	30 (100.0%)	921 (100.0%)	30.7
dong.w.xie	28 (93.3%)	920 (99.9%)	32.8
sibon.li	2 (6.7%)	1 (0.1%)	0.5

Most Recent Commits

sibon.li 2011-06-21 12:46 Rev.: 4053

Transferring my changes from branch 1.6 to trunk:

Changes to LogNormalDistributionModel to allow for the stdev value to also not
be in log space (r3774)
Changes to UncorrelatedRelaxedClockTest due to changes in
LogNormalDistributionModel in r3774 (r3775)
Minor change in MixtureModelBranchRates to fix an issue caused by changes in
revision 3735 (r3773)
Bug fix for AncestralSequenceAnnotator plus added a window to select
input/output files (r3819)
Fixed spelling for GeneralSubstitutionModelTest (r3833)
Fixed a RuntimeException for AncestralStateTreeLikelihood (r3957)

1 lines of code changed in 2 files:

src/test/dr/evomodel/branchratemodel: UncorrelatedRelaxedClockTest.java (new)

dong.w.xie 2011-04-02 13:35 Rev.: 3924

fix JUnit test as Jessie advised

4 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: UncorrelatedRelaxedClockTest.java (+4 -4)

dong.w.xie 2010-11-30 16:03 Rev.: 3733

Trunk: fix JUnit

3 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: UncorrelatedRelaxedClockTest.java (+3 -3)

dong.w.xie 2010-02-25 15:36 Rev.: 2981

Trunk refactoring: finish distribution (split parsers).

7 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: UncorrelatedRelaxedClockTest.java (+7 -6)

dong.w.xie 2010-02-25 13:51 Rev.: 2979

Trunk refactoring: organize distribution parsers.

1 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: UncorrelatedRelaxedClockTest.java (+1 -1)

dong.w.xie 2010-02-24 16:25 Rev.: 2974

Trunk refactoring: 1st part of Likelihoods (split parsers)..

19 lines of code changed in 5 files:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (new), StrictClockTest.java (+5 -4), UncorrelatedRelaxedClockTest.java (+7 -6)

dong.w.xie 2010-02-23 09:35 Rev.: 2959

Trunk refactoring: finish tree likihood model (split parsers)..

14 lines of code changed in 3 files:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (+4 -3), StrictClockTest.java (+4 -3), UncorrelatedRelaxedClockTest.java (+6 -5)

dong.w.xie 2010-02-22 14:29 Rev.: 2957

Trunk refactoring: finish tree model (split parsers)..

14 lines of code changed in 2 files:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (+6 -5), UncorrelatedRelaxedClockTest.java (+8 -7)

dong.w.xie 2010-02-19 14:41 Rev.: 2943

Trunk refactoring: finish coalescent (split parsers).

14 lines of code changed in 3 files:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (+4 -3), StrictClockTest.java (+4 -3), UncorrelatedRelaxedClockTest.java (+6 -5)

dong.w.xie 2010-02-18 16:36 Rev.: 2941

Trunk refactoring: finish branch rate and clock rate model (split parsers).

4 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (+4 -3)

dong.w.xie 2010-02-17 16:04 Rev.: 2935

Trunk refactoring: make subst parsers more organized.

3 lines of code changed in 3 files:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (+1 -1), StrictClockTest.java (+1 -1), UncorrelatedRelaxedClockTest.java (+1 -1)

dong.w.xie 2010-02-17 15:45 Rev.: 2934

Trunk refactoring: site model (split parsers).

9 lines of code changed in 3 files:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (+2 -1), StrictClockTest.java (+5 -2), UncorrelatedRelaxedClockTest.java (+2 -1)

dong.w.xie 2010-02-10 16:04 Rev.: 2908

Trunk: update tesst.

1 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (+1 -1)

dong.w.xie 2010-02-09 14:55 Rev.: 2905

Trunk: add more test.

335 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: UncorrelatedRelaxedClockTest.java (+335)

dong.w.xie 2010-02-08 16:44 Rev.: 2896

Trunk: add new test for clock rate.

224 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: StrictClockTest.java (+224)

dong.w.xie 2010-02-05 13:49 Rev.: 2886

Trunk: test for random local clock, but the model has problem, so that the test is not actived for Hudson.

268 lines of code changed in 1 file:

src/test/dr/evomodel/branchratemodel: RandomLocalClockTestProblem.java (+268)