File Sizes and File Counts
- Total Files:
- 2519
- Average File Size:
- 90.0 lines
- Average Revisions Per File:
- 7.1
File Types
| Type |
Files |
LOC |
LOC per file |
| Totals |
2519 (100.0%) |
226773 (100.0%) |
90.0 |
| *.java |
1644 (65.3%) |
143357 (63.2%) |
87.2 |
| *.xml |
117 (4.6%) |
46875 (20.7%) |
400.6 |
| *.pdf |
1 (0.0%) |
21003 (9.3%) |
21003.0 |
| *.c |
6 (0.2%) |
4400 (1.9%) |
733.3 |
| *.tex |
14 (0.6%) |
3181 (1.4%) |
227.2 |
| *.trees |
1 (0.0%) |
3055 (1.3%) |
3055.0 |
| *.log |
1 (0.0%) |
3004 (1.3%) |
3004.0 |
| *.h |
6 (0.2%) |
429 (0.2%) |
71.5 |
| *.form |
3 (0.1%) |
303 (0.1%) |
101.0 |
| *.nex |
5 (0.2%) |
222 (0.1%) |
44.4 |
| Others |
56 (2.2%) |
944 (0.4%) |
16.8 |
| Non-Code Files |
665 (26.4%) |
0 (0.0%) |
0.0 |
Largest Files
| File |
Lines of Code |
 release/common/doc/Practical_BEAST.pdf |
21003 |
| examples/release/recombination/arg-rokas.xml |
8656 |
| src/dr/geo/testLocations.xml |
4792 |
| doc/tutorial/BSP/Flu.trees |
3055 |
| doc/tutorial/BSP/Flu.log |
3004 |
| native/AminoAcidLikelihoodCore.c |
2405 |
| examples/unrelease/bushSausageUnknown.xml |
1880 |
| examples/release/testXML/testPMD.xml |
1550 |
| examples/incorrect/Mdor phygeo ages1.xml |
1475 |
| src/dr/evomodel/tree/TreeModel.java |
1336 |
| src/dr/evolution/colouring/StructuredColourSampler.java |
1282 |
| src/dr/evolution/io/NexusImporter.java |
1273 |
| examples/release/testXML/testCodonLikelihood.xml |
1183 |
| src/dr/evomodel/substmodel/AbstractSubstitutionModel.java |
1089 |
| examples/release/recombination/arg-lepto.xml |
1060 |
| src/dr/evolution/tree/Tree.java |
1015 |
| examples/release/microsatellite/microsatellite.xml |
1012 |
| doc/tutorial/Virus_Practical_1_6_1/Practical_BEAST.tex |
1007 |
| src/dr/math/matrixAlgebra/RobustEigenDecomposition.java |
986 |
| src/dr/math/ConjugateDirectionSearch.java |
965 |
Files With Most Revisions
| File |
Revisions |
| src/dr/app/beauti/options/BeautiOptions.java |
224 |
| src/dr/app/beauti/BeautiFrame.java |
216 |
| src/dr/app/beauti/generator/BeastGenerator.java |
215 |
| src/dr/app/beast/BeastParser.java |
178 |
| src/dr/app/beast/development_parsers.properties |
169 |
| src/dr/app/beast/release_parsers.properties |
119 |
| src/dr/app/beauti/datapanel/DataPanel.java |
102 |
| src/dr/app/beauti/generator/TreePriorGenerator.java |
96 |
| src/dr/app/beagle/evomodel/treelikelihood/BeagleTreeLikelihood.java |
87 |
| src/dr/app/beauti/options/ModelOptions.java |
75 |
| src/dr/app/beauti/generator/TreeLikelihoodGenerator.java |
75 |
| src/dr/app/beauti/generator/InitialTreeGenerator.java |
75 |
| src/dr/app/beauti/generator/BranchRatesModelGenerator.java |
74 |
| src/dr/app/beast/BeastMain.java |
73 |
| src/dr/app/beauti/treespanel/TreesPanel.java |
72 |
| src/dr/app/beauti/generator/Generator.java |
70 |
| src/dr/app/beauti/generator/OperatorsGenerator.java |
69 |
| src/dr/app/beagle/tools/BeagleSequenceSimulator.java |
68 |
| src/dr/app/beauti/traitspanel/TraitsPanel.java |
68 |
| src/dr/app/tools/TreeAnnotator.java |
67 |