Directory src/test/dr/integration/

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dong.w.xie 2010-09-27 13:49 Rev.: 3578

Trunk: tidy up JUnit test in app

10 lines of code changed in 2 files:

• src/test/dr/integration: GTRParameterEstimationTest.java (+10 -7)

dong.w.xie 2010-09-24 10:38 Rev.: 3568

Trunk: active a JUnit test

0 lines of code changed in 1 file:

• src/test/dr/integration: TimeIrreversibleTest.java (del)

rambaut 2010-07-28 05:46 Rev.: 3327

Forgot a couple of other things...

47 lines of code changed in 1 file:

• src/test/dr/integration: TimeIrreversibleTest.java (new 47)

dong.w.xie 2010-03-15 15:34 Rev.: 3040

TRUNK: time irreversible test (not JUnit).

120 lines of code changed in 1 file:

• src/test/dr/integration: TimeIrreversibleTest.java (+120 -47)

dong.w.xie 2010-03-12 18:08 Rev.: 3039

TRUNK: time irreversible test, not working yet.

196 lines of code changed in 1 file:

• src/test/dr/integration: TimeIrreversibleTest.java (+196)

dong.w.xie 2010-02-05 15:15 Rev.: 2887

Trunk: enable general sub model test, and correct the rate1 expectation in xml.

0 lines of code changed in 1 file:

• src/test/dr/integration: GeneralSubsitutionModelTest.java (del)

dong.w.xie 2010-02-04 13:46 Rev.: 2882

Trunk: update test.

22 lines of code changed in 1 file:

• src/test/dr/integration: GeneralSubsitutionModelTest.java (new 22)

dong.w.xie 2010-02-03 10:11 Rev.: 2876

Trunk: hide the confused constructor from MCMC.

1 lines of code changed in 1 file:

• src/test/dr/integration: GeneralSubsitutionModelTest.java (+1 -2)

dong.w.xie 2010-01-29 14:38 Rev.: 2858

Trunk: update test.

0 lines of code changed in 1 file:

• src/test/dr/integration: MCMCTest.java (del)

dong.w.xie 2010-01-29 09:52 Rev.: 2854

Trunk: add and enable new Junit test for tree likelihood.

0 lines of code changed in 1 file:

• src/test/dr/integration: LikelihoodTest.java (del)

dong.w.xie 2010-01-28 14:34 Rev.: 2852

Trunk: update LikelihoodTest integration test.

44 lines of code changed in 1 file:

• src/test/dr/integration: LikelihoodTest.java (new 44)

dong.w.xie 2010-01-28 13:45 Rev.: 2850

Trunk: make a new integration test.

221 lines of code changed in 1 file:

• src/test/dr/integration: LikelihoodTest.java (+221)

dong.w.xie 2010-01-27 14:56 Rev.: 2847

Trunk: some corrections of integration test.

73 lines of code changed in 2 files:

• src/test/dr/integration: GeneralSubsitutionModelTest.java (+16 -21), MCMCTest.java (new 57)

dong.w.xie 2010-01-27 10:41 Rev.: 2844

Trunk: add integration test MCMCTest, and enable it in Hudson.

19 lines of code changed in 2 files:

• src/test/dr/integration: GeneralSubsitutionModelTest.java (+10 -10), MCMCTest.java (+9 -16)

dong.w.xie 2010-01-27 09:53 Rev.: 2843

Trunk: correct test.

17 lines of code changed in 1 file:

• src/test/dr/integration: MCMCTest.java (+17 -4)

dong.w.xie 2010-01-26 16:08 Rev.: 2839

Trunk: more test.

188 lines of code changed in 2 files:

• src/test/dr/integration: GeneralSubsitutionModelTest.java (+178), MCMCTest.java (+10 -36)

dong.w.xie 2010-01-26 10:18 Rev.: 2838

Trunk: finish testMCMC test, but need verification.

34 lines of code changed in 1 file:

• src/test/dr/integration: MCMCTest.java (+34 -37)

dong.w.xie 2010-01-25 15:07 Rev.: 2835

Trunk: update testMCMC test.

38 lines of code changed in 1 file:

• src/test/dr/integration: MCMCTest.java (+38 -5)

dong.w.xie 2010-01-18 16:10 Rev.: 2815

Trunk: add new test draft.

169 lines of code changed in 1 file:

• src/test/dr/integration: MCMCTest.java (+169)

msuchard 2010-01-09 05:42 Rev.: 2788

Added a very simple path sampling example involving a phylogenetic problem (2-taxon tree, testing \kappa = 10 vs \kappa random)

91 lines of code changed in 1 file:

• src/test/dr/integration: PathSampling.java (new 91)

dong.w.xie 2009-08-21 11:50 Rev.: 2124

Fix the problem of BEAST using BEAUTi code, finding from r2123.

1 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+1 -2)

dong.w.xie 2009-08-21 11:01 Rev.: 2123

BEAUTi big refactory: move all enum into dr.app.beauti.enumTypes to spearate logic from GUI.
Note: some BEAST classes are using BEAUTi enum.

1 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+1)

dong.w.xie 2009-07-03 15:34 Rev.: 1822

Update Big Change of BEAUTi: the part of generator.

2 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+2 -2)

dong.w.xie 2009-06-19 14:35 Rev.: 1790

BEAUTi: rename partition series classes, and final relation is PartitionData => PartitionSubstitutionModel => PartitionTreeModel => PartitionTreePrior.

53 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+53 -26)

dong.w.xie 2009-06-19 10:36 Rev.: 1789

BEAUTi: Rename DataPartition into PartitionData, and add PartitionPopulation, to create the structure of PartitionData => PartitionModel => PartitionTree => PartitionPopulation.

118 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+118 -13)

dong.w.xie 2009-06-16 17:00 Rev.: 1781

More for GTR parameter test

61 lines of code changed in 1 file:

• src/test/dr/integration: BEASTInputFile.java (new 61)

dong.w.xie 2009-06-16 16:57 Rev.: 1780

More work on GTR parameter estimation test.

86 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+86 -95)

dong.w.xie 2009-06-12 10:28 Rev.: 1771

To fix compile error r1770.

5 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+5 -10)

dong.w.xie 2009-06-11 16:02 Rev.: 1770

Further work of GTR parameter estimation test

106 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+106 -16)

dong.w.xie 2009-06-08 17:39 Rev.: 1768

Create GTR parameter estimation test

126 lines of code changed in 1 file:

• src/test/dr/integration: GTRParameterEstimationTest.java (+126)