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rambaut 2011-12-22 02:32 Rev.: 4562

Updated native libraries for Mac release.

0 lines of code changed in 11 files:

• release/Mac/lib: libAminoAcidLikelihoodCore.jnilib (new), libNucleotideLikelihoodCore.jnilib (new), libquaqua.jnilib (new), libquaqua64.jnilib (new), quaqua-filechooser-only.jar (changed), quaqua.jar (new)

rambaut 2011-06-06 05:45 Rev.: 4007

Working towards Tracer 1.6. Switched trace 'types' (in the GUI) to 'real', 'integer' and 'categorical' as the previous ones were in programmers' jargon. These buttons also are now disabled when no trace is selected. Also disabled the confirmation box for setting types - if you press the button, then you probably intended to do it (this is a static switch at the top of the TracerFrame.java).

Cleaned up some issues with the generification of 'Variate' - in particular some methods in the plotting were not being overridden.

In 'distribution' tab, for real traces, KDEs are now the default. Histogram estimates can also be shown.

Options for plotting are now stored for specific traces (for example, if you set a manual range for a trace it is now remembered and used for this trace only).

Cleaned up some odd code in Skyline plotting (causing an erroneous warning box to appear).

Removed a few exclamation marks from dialog box messages and cleaned up the text.

0 lines of code changed in 2 files:

• release/Mac/lib: quaqua-filechooser-only.jar (changed), quaqua.jar (changed)

rambaut 2010-08-24 23:39 Rev.: 3432

Implemented a new option for default priors - an UNDEFINED prior. This comes up as red in the priors table and the XML will not generate until this is set (even to a uniform[0,+Inf] would be OK). At present, the only parameters to use this option are the rate parameters for discrete traits (i.e., 1 character partitions).

0 lines of code changed in 2 files:

• release/Mac/lib: libquaqua.jnilib (changed), quaqua.jar (changed)

rambaut 2010-08-21 03:53 Rev.: 3421

Some final cosmetic tweaks for the Mac version of BEAUti.

0 lines of code changed in 4 files:

• release/Mac/lib: libquaqua.jnilib (changed), libquaqua64.jnilib (changed), quaqua-filechooser-only.jar (changed), quaqua.jar (changed)

rambaut 2009-09-29 00:05 Rev.: 2317

Improved Mac executable generation and generalized the release scripts. Rather than taking /doc /example /native from the top level (which may have lots of crud in it) it now takes these folders from /release/common. Try to keep these clean with just the stuff we want released. Still a bit of work on the Mac executables to be done and I may have broken the Windows and Linux release targets.

0 lines of code changed in 5 files:

• release/Mac/lib: libNucleotideLikelihoodCore.jnilib (changed), libquaqua.jnilib (changed), libquaqua64.jnilib (changed), quaqua-filechooser-only.jar (changed), quaqua.jar (changed)